FiT-DB / Search/ Help/ Sample detail

Os06g0273400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.29 (0.0429) R2 : 0.465
β1 : 1.25 (0.163) R2dD : 0.0773 R2D : 0.0262
β2 : 1.75 (0.112) R2dC : 0.287 R2C : 0.257
β3 : -1.51 (0.125) R2dE : 0.185 R2E : 0.092
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.1 (0.0918) R2dN8 : 0.00185 R2N8 : 0.00483
σ : 0.801
deviance : 295.56
__
_____
C
peak time of C : 5.64
E
wheather : temperature
threshold : 25.53
memory length : 2710
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
288.82 0.798 6.26 1.4 1.74 -1.59 1.65 0.55 -0.0421 5.65 25.34 2712 -- --
288.82 0.792 6.28 1.25 1.72 -1.51 1.59 -- -0.0979 5.69 25.6 2744 -- --
295.35 0.8 6.25 1.5 1.74 -1.59 -- 0.94 -0.0481 5.65 25.6 2742 -- --
295.56 0.801 6.29 1.25 1.75 -1.51 -- -- -0.1 5.64 25.53 2710 -- --
403.41 0.935 6.25 1.72 -- -2.14 -- 1.43 0.123 -- 25.12 1993 -- --
382.09 0.916 6.31 0.723 1.66 -- 1.43 -- -0.197 6.14 -- -- -- --
387.14 0.921 6.31 0.737 1.67 -- -- -- -0.202 6.11 -- -- -- --
405.21 0.938 6.3 1.4 -- -2.01 -- -- 0.0365 -- 25.09 1983 -- --
333.01 0.85 6.34 -- 1.74 -1.24 -- -- -0.328 5.72 26.8 2743 -- --
531.63 1.08 6.34 0.784 -- -- -- -- -0.165 -- -- -- -- --
401.45 0.937 6.33 -- 1.68 -- -- -- -0.284 6.09 -- -- -- --
401.64 0.933 6.31 -- -- -2.22 -- -- -0.0325 -- 23.66 492 -- --
547.86 1.09 6.36 -- -- -- -- -- -0.252 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 280.99 radiation 10.0 1440 > th dose dependent rect. 16 1
2 281.37 radiation 10.0 1440 > th dose dependent rect. 16 14
16 282.76 wind 5.0 43200 > th dose dependent rect. 6 1
17 284.22 radiation 10.0 1440 < th dose independent rect. 16 11
19 284.28 radiation 10.0 1440 < th dose independent rect. 16 5
20 284.29 radiation 10.0 1440 < th dose independent rect. 16 7
26 284.43 radiation 10.0 1440 < th dose independent rect. 16 3
28 284.56 radiation 30.0 1440 < th dose dependent rect. 16 14
32 284.81 radiation 20.0 1440 > th dose independent rect. 16 15
33 285.23 wind 9.0 43200 > th dose independent rect. 20 12
37 285.75 wind 5.0 43200 > th dose dependent rect. 5 3
38 285.87 radiation 20.0 1440 > th dose independent rect. 16 1
63 285.97 radiation 20.0 1440 > th dose dependent rect. 15 17
65 286.14 radiation 40.0 1440 < th dose dependent rect. 16 11
69 286.32 radiation 30.0 1440 < th dose dependent rect. 16 9
72 286.41 radiation 30.0 1440 < th dose dependent rect. 16 5
80 286.51 wind 9.0 43200 < th dose independent rect. 19 13
83 286.58 radiation 30.0 1440 < th dose dependent rect. 16 3
97 286.95 wind 9.0 43200 < th dose independent rect. 20 15
98 287.03 wind 9.0 43200 > th dose independent rect. 19 17
99 287.11 wind 9.0 43200 < th dose independent rect. 19 17
105 287.45 radiation 30.0 1440 < th dose independent rect. 15 17
107 287.48 humidity 90.0 43200 > th dose independent rect. 10 1
114 287.64 humidity 90.0 43200 < th dose independent rect. 10 1
116 287.67 wind 7.0 43200 > th dose independent rect. 5 6
121 287.73 wind 5.0 43200 > th dose independent rect. 5 2
124 287.79 wind 9.0 43200 > th dose dependent rect. 20 12
137 287.99 wind 7.0 43200 < th dose independent rect. 5 6
142 288.10 wind 5.0 43200 > th dose dependent rect. 4 10
144 288.21 radiation 30.0 1440 > th dose independent rect. 15 17
145 288.28 wind 7.0 43200 > th dose dependent rect. 19 17
162 288.74 wind 5.0 43200 > th dose dependent sin 5 NA
163 288.80 wind 5.0 43200 > th dose dependent rect. 24 15
170 288.95 wind 5.0 43200 < th dose independent rect. 5 2
190 289.56 precipitation 0.1 43200 > th dose dependent rect. 4 14
197 289.73 temperature 30.0 14400 > th dose dependent rect. 17 2
212 289.81 temperature 25.0 1440 > th dose dependent rect. 16 18
225 290.10 radiation 10.0 14400 > th dose independent rect. 17 13
236 290.26 temperature 25.0 720 > th dose dependent rect. 18 15
243 290.43 temperature 25.0 1440 > th dose dependent rect. 18 1
247 290.46 wind 7.0 43200 > th dose independent sin 6 NA
259 290.58 wind 7.0 43200 < th dose independent sin 6 NA
263 290.64 wind 7.0 43200 < th dose independent rect. 2 12
288 290.84 wind 7.0 43200 > th dose independent rect. 2 12
312 291.03 radiation 1.0 14400 > th dose dependent rect. 17 1
316 291.06 wind 7.0 43200 > th dose independent rect. 23 15
322 291.16 temperature 30.0 14400 < th dose independent rect. 18 9
333 291.18 temperature 30.0 14400 < th dose independent rect. 18 7
335 291.18 radiation 40.0 14400 < th dose dependent rect. 17 10
348 291.23 radiation 20.0 14400 < th dose dependent rect. 17 4
349 291.23 radiation 20.0 14400 < th dose dependent rect. 17 6
357 291.25 temperature 25.0 1440 > th dose dependent rect. 2 7
358 291.25 radiation 20.0 14400 < th dose dependent rect. 17 8
360 291.26 radiation 20.0 14400 < th dose dependent rect. 17 1
405 291.34 wind 5.0 43200 > th dose dependent rect. 9 3
409 291.36 temperature 30.0 14400 < th dose independent rect. 18 5
410 291.36 temperature 30.0 14400 < th dose independent rect. 18 14
422 291.39 temperature 30.0 14400 < th dose independent rect. 18 3
430 291.41 temperature 25.0 1440 > th dose dependent rect. 16 7
455 291.50 radiation 10.0 14400 > th dose independent rect. 17 1
474 291.55 temperature 30.0 14400 < th dose independent rect. 18 1
486 291.66 temperature 25.0 1440 > th dose dependent rect. 7 1
488 291.68 temperature 25.0 14400 > th dose dependent rect. 19 1
508 291.75 precipitation 0.1 43200 > th dose dependent rect. 4 17
513 291.78 humidity 90.0 43200 < th dose independent rect. 17 1
524 291.84 radiation 1.0 4320 > th dose independent rect. 14 16
525 291.85 temperature 25.0 14400 > th dose independent rect. 22 2
530 291.88 radiation 1.0 4320 < th dose dependent rect. 14 16
547 291.91 radiation 1.0 4320 < th dose independent rect. 14 16
577 292.11 radiation 1.0 4320 > th dose independent rect. 8 22
591 292.25 radiation 1.0 4320 < th dose independent rect. 8 22
597 292.29 wind 5.0 43200 > th dose independent sin 4 NA
606 292.32 wind 7.0 43200 > th dose independent rect. 9 2
607 292.32 wind 7.0 43200 < th dose independent rect. 9 2
609 292.34 wind 5.0 43200 < th dose independent sin 4 NA
611 292.35 temperature 30.0 1440 > th dose independent rect. 13 1
613 292.36 temperature 25.0 14400 < th dose independent rect. 23 1
672 292.66 wind 9.0 43200 < th dose independent sin 9 NA
718 292.77 temperature 25.0 1440 > th dose dependent sin 10 NA
790 292.93 radiation 1.0 4320 < th dose dependent rect. 9 21
795 292.95 radiation 1.0 4320 < th dose independent sin 13 NA
807 292.98 humidity 90.0 43200 > th dose independent rect. 9 4
824 293.02 temperature 30.0 1440 < th dose independent rect. 13 1
827 293.02 temperature 25.0 14400 > th dose dependent rect. 21 2
868 293.16 temperature 20.0 43200 > th dose independent rect. 19 1
879 293.21 radiation 1.0 4320 > th dose independent sin 13 NA
884 293.25 humidity 80.0 14400 > th dose independent rect. 19 1
896 293.30 radiation 1.0 4320 < th dose dependent sin 14 NA
915 293.40 temperature 30.0 1440 > th dose independent rect. 13 21
926 293.48 temperature 25.0 1440 < th dose independent rect. 6 2
938 293.53 temperature 25.0 1440 > th dose independent rect. 6 2
971 293.65 temperature 30.0 14400 > th dose independent rect. 17 2