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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0272900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF231, plant domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.51 (0.0434) R2 : 0.905
β1 : 1.04 (0.159) R2dD : 0.00827 R2D : -0.0126
β2 : 8 (0.122) R2dC : 1.22 R2C : 0.479
β3 : -5.63 (0.147) R2dE : 0.409 R2E : -0.33
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.897 (0.0929) R2dN8 : 0.0264 R2N8 : -0.00146
σ : 0.811
deviance : 303.28
__
_____
C
peak time of C : 14
E
wheather : temperature
threshold : 7.077
memory length : 357
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.02
open length of G : 7.42

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
304.93 0.82 5.52 0.908 7.65 -5.07 1.36 -1.84 0.894 14 9.285 300 2.98 7.87
304.6 0.813 5.53 1.06 7.75 -5.17 0.546 -- 0.924 14.1 8.815 340 3 7.6
304.81 0.813 5.51 1.03 7.67 -5.36 -- -0.833 0.93 14 7.745 336 2.95 7.62
303.28 0.811 5.51 1.04 8 -5.63 -- -- 0.897 14 7.077 357 3.02 7.42
2091.42 2.14 5.57 0.621 -- -4.08 -- -1.17 0.824 -- -2.346 20 2.72 7.68
500.56 1.05 5.68 0.702 7.01 -- 0.937 -- 0.65 16.1 -- -- -- --
503.03 1.05 5.68 0.712 7.01 -- -- -- 0.655 16.1 -- -- -- --
1681.47 1.91 5.31 1.09 -- -4.4 -- -- 1.21 -- -30.42 65 0.0164 9.51
327.55 0.843 5.54 -- 7.91 -5.35 -- -- 0.825 14 6.279 351 3 7.53
3171.9 2.63 5.65 0.429 -- -- -- -- 0.468 -- -- -- -- --
516.41 1.06 5.7 -- 7 -- -- -- 0.576 16.1 -- -- -- --
1688.84 1.91 5.32 -- -- -4.58 -- -- 1.32 -- -4.923 65 0.0167 9.52
3176.75 2.63 5.66 -- -- -- -- -- 0.421 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 311.64 temperature 10.0 270 > th dose dependent rect. 3 8
3 316.13 radiation 1.0 270 < th dose dependent rect. 22 16
10 321.35 temperature 15.0 270 > th dose independent rect. 5 17
15 325.74 temperature 15.0 270 > th dose independent rect. 16 7
17 326.41 radiation 1.0 270 < th dose independent rect. 22 16
26 330.23 humidity 60.0 270 > th dose independent rect. 18 15
31 333.65 temperature 10.0 270 > th dose independent rect. 9 9
32 333.65 atmosphere 1015.0 270 < th dose independent rect. 9 9
33 333.65 temperature 10.0 270 > th dose independent rect. 18 15
35 333.85 radiation 40.0 270 < th dose dependent rect. 15 8
36 334.00 wind 9.0 270 < th dose independent rect. 18 15
38 334.35 radiation 40.0 270 < th dose independent rect. 18 15
44 335.38 atmosphere 995.0 270 > th dose independent rect. 18 15
46 335.47 temperature 15.0 270 > th dose independent rect. 4 19
47 335.59 radiation 1.0 270 < th dose independent rect. 22 9
48 335.89 radiation 1.0 270 < th dose dependent rect. 16 6
49 336.06 radiation 1.0 270 < th dose independent rect. 16 6
56 336.98 temperature 30.0 270 < th dose independent rect. 18 15
57 337.01 wind 1.0 270 > th dose independent rect. 9 9
59 338.01 precipitation 0.1 270 < th dose independent rect. 9 9
61 338.01 precipitation 0.1 270 < th dose dependent rect. 9 9
65 338.46 radiation 20.0 270 < th dose independent rect. 16 7
71 340.79 temperature 10.0 270 > th dose independent rect. 22 7
72 340.79 temperature 30.0 270 < th dose independent rect. 22 7
73 340.79 humidity 50.0 270 > th dose independent rect. 22 7
76 340.79 atmosphere 995.0 270 > th dose independent rect. 22 7
77 340.79 radiation 20.0 270 < th dose independent rect. 22 7
81 340.80 radiation 30.0 270 < th dose dependent rect. 22 7
83 340.81 wind 9.0 270 < th dose independent rect. 22 7
88 341.05 wind 9.0 270 < th dose independent rect. 9 9
89 341.11 wind 9.0 270 < th dose independent rect. 5 17
93 341.73 precipitation 0.1 270 < th dose independent rect. 18 15
94 341.73 precipitation 0.1 270 < th dose dependent rect. 18 15
97 341.92 radiation 40.0 270 < th dose independent rect. 16 7
98 341.92 temperature 10.0 270 > th dose independent rect. 23 17
100 342.24 precipitation 0.1 270 < th dose independent rect. 22 7
102 342.24 precipitation 0.1 270 < th dose dependent rect. 22 7
109 342.83 wind 9.0 270 < th dose independent rect. 16 7
114 343.27 precipitation 0.1 270 < th dose independent rect. 5 17
115 343.27 precipitation 0.1 270 < th dose dependent rect. 5 17
120 343.95 atmosphere 1015.0 270 < th dose independent rect. 23 17
128 344.41 precipitation 0.1 270 < th dose independent rect. 23 17
129 344.41 precipitation 0.1 270 < th dose dependent rect. 23 17
131 344.49 humidity 50.0 270 > th dose independent rect. 17 6
133 344.67 temperature 20.0 270 > th dose independent rect. 4 7
141 345.25 humidity 50.0 270 > th dose dependent rect. 22 7
146 345.65 atmosphere 995.0 270 > th dose independent rect. 23 17
153 346.21 wind 9.0 270 < th dose independent rect. 23 17
164 346.93 temperature 20.0 270 > th dose independent rect. 5 5
165 347.08 precipitation 0.1 270 < th dose independent rect. 16 7
166 347.08 precipitation 0.1 270 < th dose dependent rect. 16 7
168 347.47 temperature 30.0 270 < th dose independent rect. 17 5
172 347.90 atmosphere 995.0 270 > th dose independent rect. 17 6
192 349.20 atmosphere 1015.0 270 < th dose independent rect. 5 17
199 349.84 wind 1.0 270 > th dose independent rect. 17 6
202 350.16 atmosphere 1015.0 270 < th dose independent rect. 22 7
261 353.66 temperature 15.0 10 > th dose dependent rect. 6 6
268 353.84 wind 9.0 270 < th dose dependent rect. 5 17
289 354.49 atmosphere 1010.0 270 < th dose independent rect. 18 4
293 354.61 atmosphere 995.0 270 > th dose independent rect. 5 17
298 354.77 humidity 50.0 270 > th dose independent rect. 23 17
303 354.99 atmosphere 995.0 270 > th dose independent rect. 9 9
315 355.62 radiation 20.0 43200 < th dose dependent rect. 20 6
361 356.35 wind 7.0 270 < th dose independent rect. 4 7
439 358.70 wind 9.0 270 < th dose dependent rect. 17 5
441 358.82 precipitation 0.1 270 < th dose independent rect. 4 7
442 358.82 precipitation 0.1 270 < th dose dependent rect. 4 7
443 358.84 radiation 1.0 270 < th dose dependent sin 8 NA
457 359.26 atmosphere 995.0 270 > th dose independent rect. 4 7
458 359.26 atmosphere 1015.0 270 < th dose independent rect. 4 7
459 359.26 temperature 10.0 270 > th dose independent rect. 11 17
474 359.78 humidity 50.0 270 > th dose independent rect. 4 7
477 359.83 temperature 10.0 270 > th dose dependent rect. 18 16
480 359.88 radiation 1.0 270 > th dose independent rect. 9 9
481 359.89 wind 9.0 270 < th dose dependent rect. 22 7
482 359.98 atmosphere 1015.0 270 < th dose independent rect. 23 5
543 361.13 atmosphere 1010.0 30 < th dose independent rect. 19 6
561 361.37 temperature 25.0 30 < th dose independent rect. 24 16
562 361.37 wind 9.0 270 < th dose dependent rect. 4 7
583 361.54 wind 9.0 270 < th dose independent rect. 11 17
587 361.74 precipitation 0.1 270 < th dose independent rect. 11 17
588 361.74 precipitation 0.1 270 < th dose dependent rect. 11 17
591 361.82 humidity 50.0 270 > th dose independent rect. 5 17
707 365.25 humidity 70.0 10 > th dose independent rect. 19 6
710 365.36 humidity 50.0 270 > th dose dependent rect. 17 5
713 365.42 atmosphere 1010.0 270 < th dose independent rect. 19 2
731 366.00 temperature 15.0 10 > th dose independent rect. 6 19
804 367.63 atmosphere 1015.0 270 < th dose dependent rect. 18 4
948 370.17 radiation 1.0 90 < th dose dependent rect. 8 17
949 370.17 temperature 10.0 10 > th dose dependent rect. 6 19
970 370.59 temperature 10.0 1440 > th dose independent rect. 20 6
973 370.59 temperature 30.0 1440 < th dose independent rect. 20 6
977 370.59 humidity 50.0 1440 > th dose independent rect. 20 6
983 370.59 atmosphere 995.0 1440 > th dose independent rect. 20 6
984 370.59 radiation 1.0 1440 < th dose independent rect. 20 6