FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0272800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF231, plant domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.77 (0.0149) R2 : 0.0112
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0715 (0.0314) R2dN8 : 0.0145 R2N8 : 0.0112
σ : 0.281
deviance : 36.2
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.66 0.273 2.79 -0.262 0.0322 0.605 -0.0656 -4.56 0.0864 2.69 30.63 6 -- --
35.55 0.28 2.76 0.0134 0.0381 0.161 0.000865 -- 0.0852 4.13 30.82 6 -- --
33.67 0.272 2.79 -0.256 0.0337 0.606 -- -4.54 0.0869 3.39 30.71 6 -- --
35.53 0.278 2.76 0.0134 0.0382 0.164 -- -- 0.0853 4.1 30.84 6 -- --
33.73 0.272 2.79 -0.254 -- 0.593 -- -4.55 0.0868 -- 30.7 6 -- --
36.16 0.282 2.77 0.0255 0.00125 -- -0.0675 -- 0.0742 1.12 -- -- -- --
36.18 0.282 2.77 0.0277 0.00862 -- -- -- 0.0744 6.34 -- -- -- --
35.6 0.278 2.76 0.0161 -- 0.149 -- -- 0.0852 -- 30.88 5 -- --
35.54 0.278 2.76 -- 0.0388 0.166 -- -- 0.0839 4.07 30.81 5 -- --
36.18 0.281 2.77 0.0279 -- -- -- -- 0.0746 -- -- -- -- --
36.2 0.281 2.77 -- 0.009 -- -- -- 0.0713 6.17 -- -- -- --
35.61 0.278 2.76 -- -- 0.15 -- -- 0.0836 -- 30.9 5 -- --
36.2 0.281 2.77 -- -- -- -- -- 0.0715 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.36 temperature 10.0 1440 > th dose independent rect. 1 1
4 28.36 temperature 30.0 1440 < th dose independent rect. 1 1
8 28.36 humidity 50.0 1440 > th dose independent rect. 1 1
18 28.36 atmosphere 995.0 1440 > th dose independent rect. 1 1
19 28.36 radiation 1.0 1440 < th dose independent rect. 1 1
39 28.36 temperature 10.0 1440 > th dose independent rect. 2 23
42 28.36 radiation 1.0 1440 < th dose dependent rect. 1 1
47 28.42 humidity 90.0 30 < th dose independent rect. 24 1
48 28.43 temperature 25.0 30 > th dose independent rect. 24 1
49 28.43 temperature 15.0 30 > th dose dependent rect. 24 1
54 28.53 atmosphere 1005.0 30 > th dose independent rect. 24 1
55 28.54 wind 1.0 30 > th dose independent rect. 24 1
56 28.54 wind 7.0 30 < th dose independent rect. 24 1
58 28.54 temperature 10.0 30 > th dose independent rect. 24 1
60 28.54 temperature 30.0 30 < th dose independent rect. 24 1
61 28.54 humidity 50.0 30 > th dose independent rect. 24 1
65 28.54 atmosphere 995.0 30 > th dose independent rect. 24 1
66 28.54 radiation 1.0 30 < th dose independent rect. 24 1
71 28.54 precipitation 0.1 30 < th dose independent rect. 24 1
72 28.54 temperature 10.0 30 > th dose independent rect. 1 23
73 28.54 radiation 1.0 30 < th dose dependent rect. 24 1
78 28.54 precipitation 0.1 30 < th dose dependent rect. 24 1
80 28.55 atmosphere 1010.0 30 < th dose independent rect. 24 1
85 28.57 atmosphere 995.0 30 > th dose dependent rect. 24 1
87 28.58 wind 9.0 30 < th dose dependent rect. 24 1
88 28.59 humidity 90.0 30 < th dose dependent rect. 24 1
90 28.65 humidity 50.0 30 > th dose dependent rect. 24 1
97 28.88 wind 9.0 1440 < th dose independent rect. 1 1
99 28.95 atmosphere 1015.0 30 < th dose dependent rect. 24 1
102 29.04 wind 9.0 30 < th dose independent rect. 1 23
104 29.10 wind 1.0 30 > th dose dependent rect. 24 1
110 29.50 temperature 30.0 30 < th dose dependent rect. 24 1
171 32.05 atmosphere 1015.0 1440 < th dose independent rect. 1 1
182 32.66 temperature 25.0 30 > th dose independent rect. 24 5
183 32.69 precipitation 0.1 30 < th dose independent rect. 1 23
184 32.69 precipitation 0.1 30 < th dose dependent rect. 1 23
194 33.03 atmosphere 995.0 30 > th dose independent rect. 1 23
203 33.37 temperature 30.0 30 < th dose independent rect. 1 23
204 33.39 temperature 25.0 10 > th dose dependent rect. 24 5
208 33.49 humidity 50.0 30 > th dose independent rect. 1 23
219 33.59 temperature 30.0 10 > th dose independent rect. 9 3
280 33.70 temperature 30.0 10 > th dose dependent rect. 9 3
298 33.73 atmosphere 1015.0 30 < th dose independent rect. 1 23
301 33.74 humidity 90.0 10 < th dose independent rect. 24 5
318 33.78 temperature 30.0 10 > th dose independent rect. 16 20
319 33.78 temperature 30.0 10 > th dose dependent rect. 16 20
320 33.79 temperature 30.0 10 > th dose dependent sin 8 NA
325 33.82 temperature 30.0 90 > th dose independent rect. 11 1
391 33.91 temperature 30.0 30 > th dose independent sin 8 NA
431 34.12 temperature 30.0 90 < th dose independent sin 8 NA
502 34.28 wind 9.0 720 < th dose independent rect. 1 8
503 34.28 temperature 10.0 720 > th dose independent rect. 1 8
504 34.28 humidity 50.0 720 > th dose independent rect. 1 8
505 34.28 atmosphere 995.0 720 > th dose independent rect. 1 8
506 34.28 temperature 10.0 720 > th dose independent rect. 9 16
518 34.31 temperature 10.0 720 > th dose independent rect. 13 8
519 34.31 temperature 10.0 720 > th dose independent rect. 21 16
520 34.31 atmosphere 995.0 720 > th dose independent rect. 21 16
527 34.32 atmosphere 1015.0 720 < th dose independent rect. 1 8
555 34.35 temperature 30.0 10 > th dose dependent rect. 9 8
628 34.42 humidity 50.0 30 > th dose dependent rect. 1 23
659 34.46 radiation 40.0 720 < th dose independent rect. 1 8
792 34.57 radiation 10.0 10 < th dose independent rect. 1 23
800 34.59 wind 9.0 720 < th dose independent rect. 21 16
816 34.63 temperature 25.0 10 > th dose independent rect. 20 9
819 34.63 wind 9.0 30 < th dose dependent rect. 1 23
820 34.64 humidity 50.0 720 > th dose independent rect. 21 16
855 34.69 temperature 10.0 720 > th dose independent rect. 5 8
856 34.69 atmosphere 995.0 720 > th dose independent rect. 5 8
857 34.69 atmosphere 1015.0 720 < th dose independent rect. 5 8
859 34.69 temperature 10.0 720 > th dose independent rect. 13 16
860 34.69 temperature 30.0 10 > th dose dependent no NA NA
966 34.69 radiation 20.0 10 < th dose dependent rect. 1 23
968 34.70 temperature 30.0 10 > th dose dependent rect. 11 23
973 34.71 radiation 20.0 720 < th dose independent rect. 17 8