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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0272500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.42 (0.0259) R2 : 0.65
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.45 (0.0799) R2dC : 0.389 R2C : -0.304
β3 : 1.97 (0.0689) R2dE : 0.951 R2E : 0.239
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.216 (0.0547) R2dN8 : 0.0173 R2N8 : 0.00418
σ : 0.487
deviance : 109.34
__
_____
C
peak time of C : 15.3
E
wheather : wind
threshold : 6.659
memory length : 281
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 12.4
open length of G : 17.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
104.91 0.481 5.42 0.438 1.29 1.81 0.858 0.628 -0.19 15.9 6.899 279 11.9 18
105.81 0.479 5.42 0.408 1.3 1.79 0.431 -- -0.183 15.9 6.782 291 11.9 17.8
105.72 0.479 5.42 0.427 1.31 1.88 -- 0.258 -0.193 15.6 6.9 291 11.9 17.6
105.9 0.479 5.43 0.381 1.34 1.9 -- -- -0.21 15.5 6.712 288 12 17.6
157.69 0.585 5.39 0.574 -- 1.4 -- 0.838 -0.117 -- 15.45 213 11.5 17.6
162.99 0.599 5.43 0.637 1.55 -- 1.21 -- -0.0654 20.5 -- -- -- --
167.66 0.606 5.43 0.598 1.55 -- -- -- -0.0657 20.6 -- -- -- --
160.79 0.591 5.39 0.53 -- 1.4 -- -- -0.122 -- 22.12 219 11.4 17.4
109.34 0.487 5.42 -- 1.45 1.97 -- -- -0.216 15.3 6.659 281 12.4 17.2
301.65 0.812 5.39 0.593 -- -- -- -- -0.08 -- -- -- -- --
177.09 0.623 5.44 -- 1.54 -- -- -- -0.132 20.6 -- -- -- --
168.15 0.604 5.41 -- -- 1.41 -- -- -0.18 -- 154.8 221 11.4 17.4
310.91 0.823 5.4 -- -- -- -- -- -0.146 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 105.63 wind 7.0 270 < th dose independent rect. 12 18
5 108.61 wind 5.0 270 < th dose independent rect. 1 5
7 109.35 wind 7.0 270 < th dose independent rect. 1 16
8 109.80 precipitation 0.1 270 < th dose independent rect. 1 5
9 109.80 precipitation 0.1 270 < th dose dependent rect. 1 5
10 109.91 precipitation 0.1 270 < th dose independent rect. 12 18
11 109.91 precipitation 0.1 270 < th dose dependent rect. 12 18
13 110.62 wind 9.0 270 < th dose dependent rect. 1 5
19 111.14 wind 7.0 270 < th dose independent rect. 11 8
28 111.72 wind 5.0 270 < th dose independent rect. 2 3
29 111.73 temperature 10.0 270 > th dose independent rect. 1 5
31 111.73 temperature 30.0 270 < th dose independent rect. 1 5
32 111.73 humidity 50.0 270 > th dose independent rect. 1 5
35 111.73 atmosphere 995.0 270 > th dose independent rect. 1 5
36 111.73 atmosphere 1015.0 270 < th dose independent rect. 1 5
37 111.73 radiation 20.0 270 < th dose independent rect. 1 5
40 111.73 temperature 10.0 270 > th dose independent rect. 6 19
44 112.00 precipitation 0.1 270 < th dose independent rect. 1 16
45 112.00 precipitation 0.1 270 < th dose dependent rect. 1 16
46 112.07 radiation 40.0 270 < th dose dependent rect. 1 5
49 112.21 precipitation 0.1 270 < th dose independent rect. 2 3
50 112.21 precipitation 0.1 270 < th dose dependent rect. 2 3
57 112.50 precipitation 0.1 270 < th dose independent rect. 24 7
58 112.50 precipitation 0.1 270 < th dose dependent rect. 24 7
61 112.57 atmosphere 995.0 270 > th dose independent rect. 6 19
64 112.64 humidity 50.0 270 > th dose independent rect. 6 6
67 112.70 temperature 10.0 270 > th dose dependent rect. 11 8
68 112.72 radiation 40.0 270 < th dose dependent rect. 15 10
69 112.74 temperature 10.0 270 > th dose independent rect. 6 6
70 112.74 atmosphere 995.0 270 > th dose independent rect. 6 6
71 112.74 atmosphere 1015.0 270 < th dose independent rect. 6 6
72 112.74 temperature 10.0 270 > th dose independent rect. 12 18
73 112.81 precipitation 0.1 270 < th dose independent rect. 6 6
74 112.81 precipitation 0.1 270 < th dose dependent rect. 6 6
75 112.90 precipitation 0.1 270 < th dose independent rect. 3 1
76 112.90 precipitation 0.1 270 < th dose dependent rect. 3 1
81 112.98 wind 7.0 90 < th dose dependent rect. 3 4
83 113.03 wind 9.0 270 < th dose independent rect. 6 6
88 113.08 atmosphere 1015.0 270 < th dose independent rect. 6 19
95 113.36 precipitation 0.1 90 < th dose independent rect. 3 16
96 113.36 precipitation 0.1 90 < th dose dependent rect. 3 16
101 113.45 wind 9.0 270 < th dose dependent rect. 24 7
104 113.51 temperature 30.0 270 < th dose independent rect. 6 19
114 113.68 wind 7.0 10 < th dose dependent rect. 3 6
116 113.70 temperature 30.0 270 < th dose independent rect. 6 6
117 113.71 temperature 15.0 270 > th dose independent rect. 7 17
122 113.88 wind 1.0 270 > th dose independent rect. 3 1
123 113.90 temperature 15.0 270 > th dose independent rect. 17 8
140 114.22 radiation 40.0 270 < th dose dependent rect. 7 18
147 114.31 wind 5.0 270 < th dose independent rect. 3 1
154 114.35 radiation 10.0 270 < th dose independent rect. 16 9
156 114.36 temperature 10.0 270 > th dose independent rect. 24 7
157 114.36 temperature 30.0 270 < th dose independent rect. 24 7
158 114.36 humidity 50.0 270 > th dose independent rect. 24 7
160 114.36 atmosphere 995.0 270 > th dose independent rect. 24 7
161 114.36 radiation 40.0 270 < th dose independent rect. 24 7
167 114.40 atmosphere 1015.0 270 < th dose independent rect. 24 7
172 114.43 temperature 10.0 270 > th dose independent rect. 2 3
175 114.43 humidity 50.0 270 > th dose independent rect. 2 3
178 114.43 atmosphere 995.0 270 > th dose independent rect. 2 3
179 114.43 atmosphere 1010.0 270 < th dose independent rect. 2 3
181 114.43 radiation 20.0 270 < th dose independent rect. 2 3
184 114.43 temperature 10.0 270 > th dose independent rect. 5 21
188 114.45 radiation 30.0 270 < th dose dependent rect. 2 3
192 114.47 radiation 1.0 270 < th dose dependent rect. 2 3
202 114.51 radiation 1.0 270 < th dose independent rect. 2 3
221 114.54 atmosphere 995.0 270 > th dose independent rect. 17 8
227 114.56 temperature 10.0 90 > th dose dependent rect. 13 8
235 114.62 precipitation 0.1 270 < th dose independent rect. 6 19
236 114.62 precipitation 0.1 270 < th dose dependent rect. 6 19
249 114.74 humidity 50.0 270 > th dose independent rect. 6 19
259 114.84 wind 9.0 270 < th dose independent rect. 6 19
265 114.89 humidity 50.0 270 > th dose independent rect. 17 8
271 114.96 temperature 10.0 270 > th dose independent rect. 1 16
272 114.96 atmosphere 1015.0 270 < th dose independent rect. 1 16
336 115.40 radiation 1.0 270 > th dose independent rect. 6 6
342 115.42 radiation 40.0 90 < th dose dependent rect. 3 6
350 115.50 precipitation 0.1 10 < th dose independent rect. 3 6
351 115.50 precipitation 0.1 10 < th dose dependent rect. 3 6
361 115.56 precipitation 0.1 270 < th dose independent rect. 11 8
363 115.56 precipitation 0.1 270 < th dose dependent rect. 11 8
364 115.57 temperature 15.0 90 > th dose independent rect. 19 8
377 115.70 wind 9.0 270 < th dose independent rect. 17 8
386 115.81 temperature 15.0 270 > th dose independent rect. 19 16
390 115.83 wind 1.0 270 > th dose independent rect. 6 6
395 115.87 humidity 50.0 270 > th dose dependent rect. 1 5
422 116.28 humidity 50.0 270 > th dose independent rect. 19 16
448 116.45 radiation 1.0 270 < th dose independent rect. 7 18
470 116.53 temperature 10.0 270 > th dose independent rect. 11 8
471 116.53 atmosphere 1015.0 270 < th dose independent rect. 11 8
473 116.53 atmosphere 995.0 270 > th dose independent rect. 19 16
489 116.63 wind 9.0 90 < th dose dependent rect. 3 16
496 116.68 humidity 50.0 90 > th dose dependent rect. 19 8
499 116.71 temperature 30.0 90 < th dose independent rect. 19 8
500 116.71 humidity 50.0 90 > th dose independent rect. 19 8
502 116.71 atmosphere 995.0 90 > th dose independent rect. 19 8
503 116.71 radiation 1.0 90 < th dose independent rect. 19 8
508 116.71 temperature 10.0 90 > th dose independent rect. 3 16
509 116.71 atmosphere 1015.0 90 < th dose independent rect. 3 16
510 116.71 radiation 1.0 90 < th dose dependent rect. 19 8
518 116.76 radiation 1.0 270 < th dose dependent rect. 5 20
525 116.84 wind 9.0 90 < th dose independent rect. 19 8
531 116.86 wind 9.0 270 < th dose independent rect. 19 16
555 116.96 temperature 10.0 270 > th dose dependent rect. 1 5
556 116.97 wind 5.0 10 < th dose independent rect. 3 6
577 117.09 precipitation 0.1 270 < th dose independent rect. 7 17
579 117.09 precipitation 0.1 270 < th dose dependent rect. 7 17
595 117.10 wind 1.0 270 > th dose independent rect. 1 5
605 117.12 humidity 50.0 270 > th dose dependent rect. 2 3
672 117.48 temperature 15.0 10 > th dose independent rect. 9 18
679 117.54 humidity 50.0 90 > th dose dependent rect. 8 19
687 117.58 radiation 1.0 90 < th dose dependent rect. 5 22
693 117.61 wind 1.0 270 > th dose independent rect. 6 19
694 117.62 radiation 40.0 270 < th dose independent rect. 6 19
699 117.65 temperature 30.0 270 < th dose independent rect. 19 16
705 117.68 precipitation 0.1 270 < th dose independent rect. 17 8
706 117.68 precipitation 0.1 270 < th dose dependent rect. 17 8
708 117.69 radiation 1.0 270 > th dose independent rect. 11 19
714 117.78 precipitation 0.1 90 < th dose independent rect. 19 8
715 117.78 precipitation 0.1 90 < th dose dependent rect. 19 8
716 117.79 temperature 10.0 90 > th dose dependent rect. 3 16
724 117.84 wind 7.0 10 < th dose independent rect. 14 17
748 117.97 temperature 30.0 270 < th dose independent rect. 17 8
764 118.04 temperature 10.0 270 > th dose dependent rect. 2 3
778 118.14 wind 1.0 270 > th dose independent rect. 11 8
779 118.14 temperature 10.0 10 > th dose dependent rect. 13 8
792 118.21 wind 1.0 270 > th dose independent rect. 7 17
821 118.30 wind 9.0 270 < th dose independent rect. 5 21
839 118.37 atmosphere 995.0 10 > th dose independent rect. 9 18
843 118.41 wind 9.0 270 < th dose dependent rect. 12 18
849 118.45 wind 9.0 270 < th dose independent rect. 10 23
867 118.50 precipitation 0.1 270 < th dose independent rect. 5 21
868 118.50 temperature 10.0 270 > th dose dependent rect. 18 7
869 118.50 precipitation 0.1 270 < th dose dependent rect. 5 21
904 118.75 precipitation 0.1 10 < th dose independent rect. 14 17
905 118.75 precipitation 0.1 10 < th dose dependent rect. 14 17
918 118.80 temperature 10.0 10 > th dose independent rect. 3 6
920 118.80 temperature 30.0 10 < th dose independent rect. 3 6
921 118.80 humidity 50.0 10 > th dose independent rect. 3 6
923 118.80 atmosphere 995.0 10 > th dose independent rect. 3 6
924 118.80 atmosphere 1015.0 10 < th dose independent rect. 3 6
943 118.91 radiation 40.0 270 < th dose independent rect. 6 7
968 119.04 radiation 40.0 10 < th dose independent rect. 3 6
977 119.10 atmosphere 1015.0 270 < th dose independent rect. 19 16
979 119.11 atmosphere 1015.0 270 < th dose independent rect. 17 8