Os06g0271600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os06g0271600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 96.82 | 0.462 | 8.87 | 1.19 | 0.849 | 1.84 | 0.0179 | 1.5 | -0.264 | 20.5 | 31.1 | 93 | 1.15 | 19.4 |
| 99.56 | 0.465 | 8.86 | 1.29 | 0.849 | 1.82 | -0.579 | -- | -0.25 | 20.6 | 31.81 | 104 | 0.9 | 19.6 |
| 96.44 | 0.457 | 8.88 | 1.19 | 0.872 | 1.84 | -- | 1.61 | -0.271 | 20.6 | 31.56 | 94 | 1.27 | 19.3 |
| 100.32 | 0.466 | 8.87 | 1.35 | 0.866 | 1.81 | -- | -- | -0.239 | 20.8 | 32.04 | 111 | 0.9 | 19.6 |
| 121.27 | 0.513 | 8.85 | 1.17 | -- | 1.73 | -- | 2.06 | -0.21 | -- | 26.7 | 59 | 1.45 | 20.1 |
| 154.31 | 0.582 | 8.88 | 1.03 | 0.297 | -- | -0.415 | -- | -0.419 | 21.9 | -- | -- | -- | -- |
| 154.97 | 0.583 | 8.88 | 1.04 | 0.298 | -- | -- | -- | -0.418 | 22 | -- | -- | -- | -- |
| 123.22 | 0.517 | 8.83 | 1.34 | -- | 1.39 | -- | -- | -0.18 | -- | 28.52 | 19 | 1.78 | 21.9 |
| 142.44 | 0.556 | 8.92 | -- | 1.09 | 1.66 | -- | -- | -0.426 | 22.1 | 40.39 | 104 | 1.58 | 18.8 |
| 160.33 | 0.592 | 8.87 | 1.04 | -- | -- | -- | -- | -0.418 | -- | -- | -- | -- | -- |
| 183.54 | 0.634 | 8.91 | -- | 0.303 | -- | -- | -- | -0.534 | 22.3 | -- | -- | -- | -- |
| 162.85 | 0.594 | 8.87 | -- | -- | 1.13 | -- | -- | -0.442 | -- | 34.14 | 10 | 0.717 | 23.1 |
| 189.12 | 0.642 | 8.9 | -- | -- | -- | -- | -- | -0.534 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 98.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 19 |
| 4 | 100.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 19 |
| 34 | 106.72 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 15 |
| 36 | 106.91 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 17 |
| 50 | 108.16 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 18 |
| 54 | 108.63 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 20 |
| 61 | 109.07 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 9 |
| 67 | 109.52 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 70 | 109.67 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 10 |
| 101 | 111.15 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 17 |
| 157 | 113.37 | temperature | 10 | 10 | > th | dose dependent | sin | 2 | NA |
| 194 | 114.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 15 |
| 200 | 114.52 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 15 |
| 254 | 115.44 | wind | 9 | 14400 | > th | dose independent | rect. | 5 | 8 |
| 267 | 115.69 | temperature | 30 | 10 | < th | dose dependent | sin | 2 | NA |
| 284 | 115.88 | temperature | 10 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 305 | 116.19 | wind | 9 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 321 | 116.34 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 325 | 116.38 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 338 | 116.56 | wind | 9 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 378 | 117.08 | radiation | 10 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 391 | 117.26 | wind | 9 | 14400 | > th | dose independent | rect. | 1 | 12 |
| 427 | 117.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 433 | 117.69 | wind | 9 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 437 | 117.75 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 11 |
| 490 | 118.27 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 10 |
| 493 | 118.30 | wind | 9 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 501 | 118.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 600 | 119.32 | wind | 9 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 655 | 119.78 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 10 |
| 747 | 120.46 | radiation | 10 | 43200 | < th | dose dependent | rect. | 22 | 3 |
| 841 | 121.27 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 12 |
| 865 | 121.43 | temperature | 25 | 270 | > th | dose independent | rect. | 20 | 17 |
| 930 | 121.97 | temperature | 25 | 270 | > th | dose independent | sin | 6 | NA |
| 964 | 122.21 | temperature | 25 | 270 | < th | dose independent | sin | 6 | NA |
| 969 | 122.24 | wind | 9 | 14400 | > th | dose independent | sin | 5 | NA |
| 975 | 122.29 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 13 |
| 985 | 122.38 | wind | 9 | 14400 | < th | dose independent | sin | 4 | NA |
| 999 | 122.48 | wind | 9 | 14400 | > th | dose dependent | rect. | 1 | 12 |