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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0271400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0458) R2 : 0.108
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.2 (0.499) R2dE : 0.0795 R2E : 0.0589
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.431 (0.0968) R2dN8 : 0.0491 R2N8 : 0.0285
σ : 0.861
deviance : 341.42
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.19
memory length : 279
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 8.24
open length of G : 8.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
330.48 0.854 2.95 0.099 0.377 3.93 -0.932 0.316 0.438 1.91 0.9509 280 8.12 8.06
330.36 0.847 2.94 0.0979 0.384 3.83 -0.88 -- 0.45 1.83 1.02 279 8.17 8.07
333.4 0.85 2.95 0.104 0.365 3.8 -- 0.791 0.436 1.66 1.04 277 8.2 8.08
333.43 0.85 2.94 0.112 0.373 3.54 -- -- 0.444 1.43 1.079 280 8.22 8.03
341.35 0.86 2.95 0.0957 -- 3.68 -- 1.25 0.439 -- 1.067 279 8.22 8.05
365.86 0.897 2.96 -0.178 0.27 -- -0.316 -- 0.349 0.292 -- -- -- --
366.29 0.896 2.96 -0.166 0.272 -- -- -- 0.351 0.357 -- -- -- --
341.28 0.86 2.94 0.116 -- 3.36 -- -- 0.451 -- 1.171 280 8.27 8.1
333.65 0.851 2.94 -- 0.362 3.46 -- -- 0.429 1.61 1.062 280 8.25 8.03
370.93 0.9 2.96 -0.157 -- -- -- -- 0.355 -- -- -- -- --
367.02 0.896 2.96 -- 0.269 -- -- -- 0.369 0.325 -- -- -- --
341.42 0.861 2.95 -- -- 3.2 -- -- 0.431 -- 1.19 279 8.24 8.1
371.58 0.9 2.95 -- -- -- -- -- 0.373 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 331.96 radiation 1.0 270 < th dose independent rect. 8 8
3 333.29 radiation 1.0 270 < th dose dependent rect. 8 8
9 334.86 wind 1.0 10 < th dose independent rect. 2 3
23 338.94 wind 1.0 10 < th dose independent rect. 2 7
25 338.96 wind 1.0 10 < th dose independent rect. 2 5
36 342.22 humidity 80.0 270 > th dose dependent rect. 10 7
44 343.52 radiation 1.0 270 < th dose independent rect. 14 2
49 343.72 radiation 1.0 270 < th dose dependent rect. 14 2
50 343.88 atmosphere 1010.0 10 < th dose independent rect. 3 23
54 344.15 radiation 1.0 720 > th dose independent rect. 7 8
55 344.27 humidity 80.0 270 > th dose independent rect. 8 10
69 344.88 wind 1.0 10 < th dose dependent rect. 2 2
71 344.92 wind 9.0 10 < th dose independent rect. 3 23
75 344.99 wind 1.0 10 < th dose independent rect. 24 5
88 345.41 humidity 80.0 270 > th dose independent rect. 23 19
90 345.48 wind 1.0 10 < th dose independent rect. 2 11
92 345.51 radiation 1.0 720 > th dose independent rect. 18 21
99 345.56 wind 1.0 10 < th dose independent rect. 13 15
106 345.76 radiation 1.0 720 < th dose independent rect. 9 2
107 345.76 radiation 1.0 720 < th dose dependent rect. 9 2
114 345.92 wind 1.0 10 < th dose independent rect. 17 11
117 345.93 wind 1.0 10 < th dose independent rect. 21 7
138 346.32 humidity 90.0 270 > th dose dependent rect. 11 2
139 346.33 wind 1.0 10 < th dose independent rect. 6 22
141 346.34 wind 1.0 10 > th dose independent rect. 7 23
147 346.42 humidity 90.0 270 > th dose independent rect. 11 2
159 346.64 humidity 80.0 720 < th dose independent rect. 7 8
165 346.77 wind 1.0 10 < th dose independent rect. 24 9
168 346.80 atmosphere 1015.0 1440 < th dose independent rect. 8 5
169 346.80 wind 1.0 10 < th dose independent rect. 24 7
171 346.82 atmosphere 1015.0 1440 > th dose independent rect. 10 3
180 346.84 humidity 80.0 10 > th dose dependent rect. 11 10
185 346.88 atmosphere 1015.0 1440 < th dose independent rect. 5 8
187 346.92 temperature 20.0 10 > th dose independent rect. 2 2
193 346.93 temperature 10.0 30 > th dose dependent rect. 3 23
197 346.96 humidity 80.0 720 < th dose independent rect. 3 12
208 347.06 atmosphere 1015.0 720 < th dose independent rect. 3 16
216 347.12 humidity 80.0 720 < th dose independent rect. 23 16
268 347.80 humidity 80.0 720 < th dose independent rect. 11 4
271 347.82 temperature 20.0 90 > th dose independent rect. 2 1
276 347.84 humidity 80.0 720 > th dose independent rect. 24 15
290 347.95 atmosphere 1010.0 10 < th dose independent rect. 4 11
295 347.96 temperature 15.0 270 > th dose dependent rect. 7 15
299 347.99 wind 1.0 30 < th dose dependent rect. 4 1
316 348.14 radiation 1.0 720 < th dose dependent rect. 23 17
326 348.24 precipitation 0.1 720 > th dose independent rect. 9 2
330 348.24 precipitation 0.1 720 > th dose dependent rect. 9 2
335 348.31 temperature 20.0 10 > th dose dependent rect. 2 1
336 348.32 temperature 15.0 4320 > th dose independent rect. 12 1
337 348.32 precipitation 0.1 10 > th dose independent rect. 3 1
343 348.32 precipitation 0.1 10 > th dose dependent rect. 3 1
373 348.58 temperature 25.0 270 < th dose dependent rect. 8 12
379 348.63 wind 1.0 10 < th dose independent rect. 2 16
384 348.65 radiation 1.0 4320 < th dose dependent rect. 3 1
385 348.68 wind 1.0 10 < th dose independent rect. 2 14
397 348.74 atmosphere 1005.0 10 > th dose independent rect. 2 1
401 348.75 wind 9.0 1440 < th dose independent rect. 3 1
402 348.75 temperature 10.0 1440 > th dose independent rect. 3 1
405 348.75 temperature 30.0 1440 < th dose independent rect. 3 1
409 348.75 humidity 50.0 1440 > th dose independent rect. 3 1
418 348.75 atmosphere 995.0 1440 > th dose independent rect. 3 1
419 348.75 radiation 1.0 1440 < th dose independent rect. 3 1
439 348.75 temperature 10.0 1440 > th dose independent rect. 4 23
451 348.76 temperature 20.0 90 > th dose dependent rect. 1 2
470 348.87 atmosphere 995.0 30 > th dose independent rect. 3 23
473 348.90 humidity 80.0 30 > th dose independent rect. 2 1
495 349.00 atmosphere 1000.0 30 > th dose dependent rect. 2 1
497 349.01 atmosphere 1015.0 1440 > th dose dependent rect. 10 3
506 349.03 wind 9.0 30 < th dose independent rect. 2 1
507 349.03 temperature 10.0 30 > th dose independent rect. 2 1
509 349.03 temperature 30.0 30 < th dose independent rect. 2 1
511 349.03 humidity 50.0 30 > th dose independent rect. 2 1
514 349.03 atmosphere 995.0 30 > th dose independent rect. 2 1
515 349.03 atmosphere 1010.0 30 < th dose independent rect. 2 1
517 349.03 radiation 1.0 30 < th dose independent rect. 2 1
522 349.03 precipitation 0.1 30 < th dose independent rect. 2 1
523 349.03 temperature 10.0 30 > th dose independent rect. 3 23
524 349.03 radiation 1.0 30 < th dose dependent rect. 2 1
529 349.03 precipitation 0.1 30 < th dose dependent rect. 2 1
539 349.07 wind 1.0 10 > th dose independent sin 9 NA
541 349.07 humidity 90.0 30 > th dose independent rect. 11 9
543 349.07 humidity 50.0 30 > th dose dependent rect. 2 1
552 349.09 atmosphere 1015.0 30 < th dose dependent rect. 2 1
553 349.09 temperature 30.0 10 < th dose dependent rect. 10 11
554 349.10 temperature 15.0 90 > th dose dependent rect. 7 18
556 349.11 temperature 20.0 90 < th dose dependent rect. 11 9
584 349.22 precipitation 0.1 10 < th dose independent rect. 3 23
587 349.22 precipitation 0.1 10 < th dose dependent rect. 3 23
590 349.25 temperature 15.0 4320 > th dose independent rect. 7 6
602 349.29 wind 9.0 30 < th dose dependent rect. 2 1
614 349.33 wind 1.0 30 > th dose independent rect. 2 1
634 349.37 atmosphere 1010.0 10 < th dose independent rect. 4 13
648 349.44 radiation 1.0 1440 > th dose independent rect. 9 3
650 349.45 temperature 30.0 30 < th dose dependent rect. 2 1
687 349.50 radiation 1.0 720 < th dose independent rect. 23 17
702 349.56 temperature 25.0 720 > th dose independent rect. 7 8
752 349.73 temperature 15.0 720 > th dose independent rect. 3 12
767 349.76 temperature 20.0 10 < th dose dependent rect. 11 10
790 349.84 temperature 20.0 10 < th dose dependent rect. 6 15
815 349.96 humidity 70.0 10 > th dose dependent rect. 6 22
852 350.09 wind 1.0 10 > th dose independent rect. 21 9
863 350.11 humidity 80.0 270 > th dose dependent sin 22 NA
889 350.20 temperature 25.0 720 > th dose independent rect. 10 5
931 350.33 humidity 80.0 270 > th dose independent sin 0 NA
943 350.36 temperature 10.0 720 > th dose dependent rect. 3 12
947 350.37 humidity 70.0 10 > th dose dependent rect. 6 15
952 350.40 humidity 80.0 720 > th dose independent sin 3 NA
962 350.42 temperature 30.0 10 < th dose dependent rect. 6 15
963 350.43 precipitation 0.1 720 > th dose independent rect. 2 1
966 350.43 precipitation 0.1 720 > th dose dependent rect. 2 1
967 350.43 temperature 25.0 720 < th dose dependent rect. 8 5
973 350.46 wind 1.0 10 < th dose independent sin 7 NA
984 350.49 temperature 10.0 720 > th dose dependent rect. 7 8
997 350.54 temperature 20.0 270 < th dose dependent rect. 12 6
998 350.55 humidity 80.0 720 < th dose independent sin 3 NA