Os06g0269200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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Os06g0269200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 362.47 | 0.895 | 3.25 | 0.425 | 0.146 | 0.691 | 1.01 | 3.63 | -0.14 | 6.53 | 1011 | 193 | -- | -- |
| 372.6 | 0.899 | 3.25 | 0.332 | 0.183 | 0.97 | 0.78 | -- | -0.0532 | 5.79 | 1009 | 233 | -- | -- |
| 364.23 | 0.889 | 3.25 | 0.442 | 0.2 | 0.704 | -- | 3.9 | -0.142 | 4.58 | 1011 | 184 | -- | -- |
| 373.62 | 0.9 | 3.26 | 0.336 | 0.202 | 0.951 | -- | -- | -0.0604 | 4.1 | 1009 | 201 | -- | -- |
| 366.12 | 0.891 | 3.25 | 0.441 | -- | 0.645 | -- | 3.54 | -0.154 | -- | 1011 | 163 | -- | -- |
| 389.1 | 0.925 | 3.3 | 0.396 | 0.131 | -- | 0.683 | -- | -0.252 | 5.68 | -- | -- | -- | -- |
| 389.5 | 0.924 | 3.3 | 0.397 | 0.172 | -- | -- | -- | -0.257 | 3.05 | -- | -- | -- | -- |
| 375.74 | 0.903 | 3.26 | 0.345 | -- | 0.931 | -- | -- | -0.0556 | -- | 1009 | 248 | -- | -- |
| 376.56 | 0.904 | 3.26 | -- | 0.207 | 0.987 | -- | -- | -0.0892 | 4.11 | 1009 | 231 | -- | -- |
| 391.19 | 0.924 | 3.3 | 0.404 | -- | -- | -- | -- | -0.252 | -- | -- | -- | -- | -- |
| 393.65 | 0.928 | 3.31 | -- | 0.18 | -- | -- | -- | -0.301 | 3.06 | -- | -- | -- | -- |
| 378.86 | 0.907 | 3.27 | -- | -- | 0.967 | -- | -- | -0.0879 | -- | 1009 | 249 | -- | -- |
| 395.5 | 0.928 | 3.31 | -- | -- | -- | -- | -- | -0.297 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 351.01 | wind | 5.0 | 90 | > th | dose independent | rect. | 1 | 7 |
| 2 | 351.04 | wind | 5.0 | 90 | > th | dose dependent | rect. | 1 | 7 |
| 3 | 354.95 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 7 | 1 |
| 4 | 355.59 | radiation | 20.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 18 | 355.59 | radiation | 20.0 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 37 | 357.94 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 38 | 357.99 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 39 | 358.18 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 55 | 359.55 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 14 | 20 |
| 56 | 359.61 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 15 | 5 |
| 72 | 360.19 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 79 | 360.35 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 14 | 14 |
| 80 | 360.36 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 86 | 360.57 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 104 | 360.91 | humidity | 80.0 | 90 | < th | dose independent | rect. | 7 | 1 |
| 109 | 361.05 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 157 | 361.98 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 21 | 21 |
| 161 | 362.00 | humidity | 80.0 | 10 | < th | dose independent | rect. | 7 | 1 |
| 168 | 362.14 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 19 | 13 |
| 173 | 362.22 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 175 | 362.26 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 10 | 8 |
| 191 | 362.51 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 200 | 362.59 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 211 | 362.69 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 12 | 13 |
| 225 | 362.89 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 230 | 362.97 | atmosphere | 1010.0 | 270 | < th | dose dependent | no | NA | NA |
| 279 | 363.42 | atmosphere | 1010.0 | 270 | < th | dose dependent | sin | 10 | NA |
| 287 | 363.48 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 292 | 363.52 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 297 | 363.57 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 307 | 363.62 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 310 | 363.63 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 313 | 363.64 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 324 | 363.72 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 356 | 364.00 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 21 | 11 |
| 379 | 364.23 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 404 | 364.43 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 12 | 2 |
| 423 | 364.53 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 435 | 364.61 | temperature | 20.0 | 720 | < th | dose dependent | sin | 18 | NA |
| 455 | 364.70 | atmosphere | 1010.0 | 720 | < th | dose dependent | rect. | 20 | 6 |
| 461 | 364.75 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 466 | 364.77 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 20 | 7 |
| 475 | 364.79 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 482 | 364.83 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 483 | 364.83 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 10 | 5 |
| 491 | 364.85 | temperature | 15.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 494 | 364.87 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 12 | 3 |
| 495 | 364.87 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 12 | 3 |
| 504 | 364.92 | atmosphere | 995.0 | 270 | > th | dose dependent | no | NA | NA |
| 543 | 365.07 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 18 | 2 |
| 563 | 365.15 | atmosphere | 1010.0 | 720 | < th | dose dependent | rect. | 17 | 11 |
| 583 | 365.20 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 604 | 365.27 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 608 | 365.28 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 626 | 365.33 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 12 | 8 |
| 656 | 365.44 | temperature | 15.0 | 10 | > th | dose independent | rect. | 21 | 23 |
| 682 | 365.52 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 692 | 365.54 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 20 | 10 |
| 766 | 365.76 | radiation | 1.0 | 720 | < th | dose independent | rect. | 11 | 2 |
| 769 | 365.76 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 11 | 2 |
| 777 | 365.78 | atmosphere | 1000.0 | 720 | > th | dose dependent | rect. | 18 | 9 |
| 798 | 365.84 | humidity | 90.0 | 720 | > th | dose independent | rect. | 12 | 1 |
| 801 | 365.84 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 810 | 365.86 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 2 | 15 |
| 845 | 365.97 | atmosphere | 995.0 | 270 | > th | dose dependent | sin | 10 | NA |
| 859 | 366.00 | atmosphere | 1000.0 | 720 | > th | dose dependent | rect. | 18 | 11 |
| 863 | 366.02 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 15 | 2 |