Os06g0268900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os06g0268900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 122.38 | 0.52 | 7.63 | 2.43 | 1.7 | -0.675 | -2.12 | 2.18 | 0.285 | 9.21 | 29.87 | 1269 | -- | -- |
| 131.15 | 0.533 | 7.63 | 2.54 | 1.69 | -0.599 | -1.85 | -- | 0.297 | 9.14 | 29.84 | 1288 | -- | -- |
| 137.18 | 0.545 | 7.63 | 2.42 | 1.65 | -0.648 | -- | 2.1 | 0.299 | 9.14 | 29.88 | 1401 | -- | -- |
| 142.75 | 0.556 | 7.63 | 2.52 | 1.69 | -0.641 | -- | -- | 0.309 | 9.16 | 29.88 | 1285 | -- | -- |
| 283.41 | 0.784 | 7.66 | 2.37 | -- | -0.587 | -- | 2.12 | 0.311 | -- | 27.18 | 1573 | -- | -- |
| 142.4 | 0.559 | 7.59 | 2.65 | 1.6 | -- | -1.88 | -- | 0.459 | 9.03 | -- | -- | -- | -- |
| 154.66 | 0.582 | 7.59 | 2.59 | 1.61 | -- | -- | -- | 0.457 | 8.99 | -- | -- | -- | -- |
| 289.13 | 0.795 | 7.64 | 2.57 | -- | -0.512 | -- | -- | 0.464 | -- | 29.88 | 1285 | -- | -- |
| 296.72 | 0.802 | 7.68 | -- | 1.73 | -0.757 | -- | -- | 0.000341 | 8.86 | 30 | 1267 | -- | -- |
| 303.88 | 0.815 | 7.64 | 2.58 | -- | -- | -- | -- | 0.467 | -- | -- | -- | -- | -- |
| 330.92 | 0.851 | 7.66 | -- | 1.62 | -- | -- | -- | 0.169 | 8.87 | -- | -- | -- | -- |
| 421.42 | 0.959 | 7.69 | -- | -- | -0.765 | -- | -- | 0.21 | -- | 10.01 | 1585 | -- | -- |
| 480.04 | 1.02 | 7.7 | -- | -- | -- | -- | -- | 0.18 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 116.88 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 2 | 116.98 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 3 | 117.41 | wind | 9.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 4 | 117.44 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 5 | 117.76 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 8 | 117.90 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 10 | 118.02 | wind | 9.0 | 4320 | > th | dose independent | rect. | 17 | 6 |
| 11 | 118.03 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 14 | 118.10 | wind | 9.0 | 4320 | > th | dose independent | rect. | 16 | 10 |
| 16 | 118.11 | wind | 9.0 | 4320 | > th | dose independent | rect. | 16 | 8 |
| 47 | 118.49 | wind | 9.0 | 4320 | < th | dose independent | rect. | 16 | 17 |
| 50 | 118.52 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 62 | 118.78 | wind | 5.0 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 64 | 118.88 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 5 |
| 82 | 119.22 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 16 | 8 |
| 84 | 119.24 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 112 | 119.43 | wind | 5.0 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 199 | 120.29 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 9 |
| 268 | 120.88 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 281 | 120.98 | wind | 7.0 | 4320 | > th | dose independent | sin | 13 | NA |
| 286 | 121.02 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 22 | 3 |
| 295 | 121.09 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 22 | 3 |
| 323 | 121.41 | wind | 7.0 | 4320 | < th | dose independent | sin | 13 | NA |
| 324 | 121.46 | wind | 7.0 | 4320 | > th | dose dependent | sin | 12 | NA |
| 336 | 121.64 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 342 | 121.71 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 22 | 10 |
| 349 | 121.78 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 357 | 121.93 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 359 | 121.93 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 12 | 7 |
| 362 | 121.95 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 364 | 121.98 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 373 | 122.07 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 374 | 122.09 | temperature | 20.0 | 30 | > th | dose independent | rect. | 1 | 3 |
| 375 | 122.09 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 13 | 6 |
| 385 | 122.14 | wind | 5.0 | 4320 | < th | dose independent | rect. | 21 | 4 |
| 387 | 122.15 | humidity | 90.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 392 | 122.16 | wind | 5.0 | 4320 | > th | dose independent | rect. | 21 | 4 |
| 416 | 122.28 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 425 | 122.32 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 11 | 9 |
| 428 | 122.33 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 440 | 122.40 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 451 | 122.44 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 460 | 122.47 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 463 | 122.48 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 9 | 11 |
| 469 | 122.50 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 472 | 122.51 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 12 | 4 |
| 506 | 122.62 | humidity | 90.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 510 | 122.63 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 12 | 4 |
| 535 | 122.69 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 538 | 122.71 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 540 | 122.71 | wind | 5.0 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 591 | 122.86 | radiation | 10.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 592 | 122.86 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 9 | 13 |
| 603 | 122.89 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 627 | 122.94 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 629 | 122.94 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 12 | 9 |
| 640 | 122.97 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 652 | 123.00 | radiation | 10.0 | 720 | < th | dose independent | rect. | 16 | 2 |
| 668 | 123.02 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 675 | 123.04 | wind | 9.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 678 | 123.04 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 689 | 123.07 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 715 | 123.13 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 725 | 123.15 | wind | 1.0 | 270 | < th | dose dependent | rect. | 21 | 5 |
| 732 | 123.17 | wind | 5.0 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 733 | 123.17 | wind | 1.0 | 270 | < th | dose independent | rect. | 22 | 4 |
| 745 | 123.20 | wind | 5.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 756 | 123.21 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 757 | 123.21 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 759 | 123.21 | temperature | 20.0 | 14400 | < th | dose dependent | rect. | 9 | 6 |
| 763 | 123.22 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 767 | 123.22 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 23 | 8 |
| 771 | 123.23 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 788 | 123.26 | temperature | 20.0 | 14400 | < th | dose independent | sin | 22 | NA |
| 789 | 123.26 | wind | 1.0 | 30 | < th | dose independent | rect. | 21 | 7 |
| 800 | 123.27 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 820 | 123.29 | temperature | 20.0 | 14400 | > th | dose independent | sin | 22 | NA |
| 973 | 123.58 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 8 | 1 |