Os06g0268700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os06g0268700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.78 | 0.375 | 11.6 | -0.79 | 0.922 | 0.851 | 0.577 | -2.34 | -0.116 | 4.08 | 21.21 | 1328 | -- | -- |
| 67.46 | 0.383 | 11.5 | -0.141 | 0.915 | 0.993 | 0.5 | -- | 0.0668 | 4.11 | 14.61 | 1275 | -- | -- |
| 64.38 | 0.374 | 11.6 | -0.806 | 0.925 | 0.883 | -- | -2.49 | -0.117 | 4.19 | 22.53 | 1304 | -- | -- |
| 68 | 0.384 | 11.5 | -0.157 | 0.913 | 1 | -- | -- | 0.0573 | 4.28 | 14.02 | 1231 | -- | -- |
| 106.97 | 0.482 | 11.6 | -0.837 | -- | 1.18 | -- | -2.73 | -0.0783 | -- | 24 | 1231 | -- | -- |
| 83.6 | 0.429 | 11.5 | 0.154 | 0.993 | -- | 0.528 | -- | 0.239 | 3.93 | -- | -- | -- | -- |
| 84.39 | 0.43 | 11.5 | 0.147 | 0.998 | -- | -- | -- | 0.236 | 4 | -- | -- | -- | -- |
| 111.66 | 0.492 | 11.5 | -0.197 | -- | 1.27 | -- | -- | 0.0369 | -- | 13.24 | 1193 | -- | -- |
| 68.56 | 0.386 | 11.5 | -- | 0.916 | 0.939 | -- | -- | 0.085 | 4.28 | 13.26 | 1216 | -- | -- |
| 138.8 | 0.551 | 11.5 | 0.188 | -- | -- | -- | -- | 0.263 | -- | -- | -- | -- | -- |
| 84.96 | 0.431 | 11.5 | -- | 1 | -- | -- | -- | 0.22 | 4 | -- | -- | -- | -- |
| 112.55 | 0.494 | 11.5 | -- | -- | 1.19 | -- | -- | 0.0705 | -- | 13.06 | 1190 | -- | -- |
| 139.73 | 0.552 | 11.5 | -- | -- | -- | -- | -- | 0.242 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.65 | temperature | 10 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 6 | 58.05 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 19 |
| 8 | 58.28 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 19 | 60.01 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 15 |
| 23 | 60.32 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 40 | 61.00 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 20 |
| 41 | 61.03 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 45 | 61.12 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 19 |
| 46 | 61.14 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 49 | 61.16 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 50 | 61.18 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 20 |
| 60 | 61.41 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 20 |
| 65 | 61.50 | wind | 7 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 67 | 61.52 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 21 |
| 72 | 61.55 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 77 | 61.57 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 86 | 61.62 | wind | 7 | 43200 | > th | dose dependent | rect. | 24 | 21 |
| 90 | 61.65 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 17 |
| 94 | 61.68 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 16 |
| 116 | 61.74 | humidity | 80 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 138 | 61.83 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 19 |
| 155 | 61.90 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 11 |
| 172 | 61.94 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 13 |
| 205 | 62.02 | wind | 7 | 43200 | > th | dose dependent | sin | 23 | NA |
| 233 | 62.09 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 22 |
| 236 | 62.10 | wind | 5 | 43200 | > th | dose independent | sin | 16 | NA |
| 243 | 62.11 | wind | 5 | 43200 | < th | dose independent | sin | 16 | NA |
| 248 | 62.11 | wind | 3 | 43200 | > th | dose dependent | sin | 16 | NA |
| 259 | 62.14 | temperature | 20 | 90 | > th | dose independent | rect. | 4 | 17 |
| 272 | 62.17 | wind | 9 | 43200 | > th | dose dependent | sin | 17 | NA |
| 284 | 62.19 | wind | 3 | 43200 | > th | dose dependent | sin | 22 | NA |
| 285 | 62.19 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 288 | 62.19 | wind | 3 | 43200 | > th | dose dependent | rect. | 4 | 17 |
| 291 | 62.20 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 342 | 62.28 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 349 | 62.29 | wind | 9 | 43200 | > th | dose independent | rect. | 2 | 19 |
| 356 | 62.30 | wind | 9 | 43200 | > th | dose independent | rect. | 24 | 21 |
| 368 | 62.31 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 374 | 62.31 | wind | 3 | 43200 | > th | dose dependent | rect. | 23 | 22 |
| 406 | 62.36 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 8 |
| 416 | 62.37 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 450 | 62.41 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 464 | 62.42 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 22 |
| 476 | 62.43 | wind | 9 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 479 | 62.43 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 6 |
| 487 | 62.43 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 491 | 62.44 | wind | 7 | 43200 | > th | dose dependent | no | NA | NA |
| 508 | 62.45 | wind | 7 | 43200 | > th | dose dependent | rect. | 18 | 23 |
| 519 | 62.46 | wind | 7 | 43200 | > th | dose dependent | rect. | 8 | 23 |
| 545 | 62.49 | wind | 9 | 43200 | < th | dose independent | rect. | 2 | 19 |
| 581 | 62.52 | wind | 9 | 43200 | < th | dose independent | rect. | 24 | 21 |
| 598 | 62.54 | wind | 9 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 610 | 62.55 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 10 |
| 646 | 62.60 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 695 | 62.66 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 7 |
| 711 | 62.68 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 778 | 62.76 | wind | 3 | 43200 | > th | dose dependent | no | NA | NA |
| 860 | 62.86 | wind | 5 | 43200 | < th | dose independent | rect. | 4 | 16 |
| 882 | 62.88 | wind | 9 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 906 | 62.92 | wind | 9 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 916 | 62.93 | wind | 9 | 43200 | > th | dose independent | rect. | 7 | 21 |
| 923 | 62.94 | wind | 9 | 43200 | > th | dose independent | rect. | 5 | 23 |
| 931 | 62.95 | wind | 9 | 43200 | > th | dose independent | no | NA | NA |
| 939 | 62.95 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 968 | 62.98 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 15 |