Os06g0268600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os06g0268600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.1 | 0.453 | 2.83 | 0.109 | 0.18 | -0.501 | 0.662 | 0.361 | 0.0809 | 12.5 | 1.1 | 15 | -- | -- |
| 93.23 | 0.45 | 2.83 | 0.122 | 0.18 | -0.474 | 0.688 | -- | 0.0821 | 12.5 | 1.1 | 14 | -- | -- |
| 94.82 | 0.454 | 2.83 | 0.128 | 0.178 | -0.477 | -- | 0.572 | 0.0802 | 11.4 | 1.136 | 14 | -- | -- |
| 95.15 | 0.454 | 2.83 | 0.153 | 0.18 | -0.441 | -- | -- | 0.0885 | 11.4 | 1.2 | 14 | -- | -- |
| 96.71 | 0.458 | 2.84 | 0.121 | -- | -0.452 | -- | 0.646 | 0.0749 | -- | 1.131 | 16 | -- | -- |
| 99.4 | 0.467 | 2.83 | 0.193 | 0.175 | -- | 0.495 | -- | 0.0779 | 10 | -- | -- | -- | -- |
| 100.02 | 0.468 | 2.83 | 0.21 | 0.197 | -- | -- | -- | 0.0768 | 8.43 | -- | -- | -- | -- |
| 97.12 | 0.459 | 2.83 | 0.155 | -- | -0.404 | -- | -- | 0.0842 | -- | 1.172 | 14 | -- | -- |
| 95.8 | 0.456 | 2.82 | -- | 0.174 | -0.455 | -- | -- | 0.0837 | 11.3 | 1.187 | 14 | -- | -- |
| 102.17 | 0.472 | 2.83 | 0.211 | -- | -- | -- | -- | 0.0788 | -- | -- | -- | -- | -- |
| 101.17 | 0.471 | 2.83 | -- | 0.197 | -- | -- | -- | 0.0535 | 8.35 | -- | -- | -- | -- |
| 97.68 | 0.46 | 2.83 | -- | -- | -0.449 | -- | -- | 0.0622 | -- | 1.1 | 16 | -- | -- |
| 103.34 | 0.474 | 2.84 | -- | -- | -- | -- | -- | 0.0554 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.68 | humidity | 90.0 | 90 | > th | dose independent | rect. | 9 | 1 |
| 2 | 84.68 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 9 | 1 |
| 3 | 84.78 | wind | 1.0 | 10 | < th | dose independent | rect. | 13 | 1 |
| 7 | 84.78 | wind | 1.0 | 10 | < th | dose dependent | rect. | 13 | 1 |
| 11 | 84.79 | wind | 1.0 | 10 | < th | dose independent | rect. | 14 | 4 |
| 15 | 84.79 | wind | 1.0 | 10 | < th | dose dependent | rect. | 14 | 4 |
| 25 | 84.84 | wind | 1.0 | 90 | < th | dose dependent | rect. | 12 | 2 |
| 109 | 85.67 | wind | 1.0 | 10 | < th | dose dependent | rect. | 7 | 8 |
| 176 | 86.19 | wind | 1.0 | 30 | < th | dose dependent | sin | 22 | NA |
| 221 | 86.58 | wind | 1.0 | 30 | < th | dose independent | rect. | 6 | 9 |
| 294 | 87.49 | wind | 1.0 | 30 | < th | dose independent | sin | 22 | NA |
| 302 | 87.66 | temperature | 25.0 | 90 | > th | dose independent | rect. | 1 | 3 |
| 312 | 87.73 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 3 |
| 315 | 87.75 | wind | 1.0 | 10 | > th | dose independent | sin | 21 | NA |
| 328 | 87.89 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 370 | 88.33 | wind | 1.0 | 30 | < th | dose independent | rect. | 6 | 21 |
| 379 | 88.59 | wind | 1.0 | 10 | < th | dose independent | sin | 19 | NA |
| 411 | 89.08 | wind | 1.0 | 30 | < th | dose independent | rect. | 13 | 14 |
| 418 | 89.13 | wind | 1.0 | 30 | < th | dose dependent | rect. | 6 | 21 |
| 424 | 89.20 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 426 | 89.21 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 429 | 89.21 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 431 | 89.21 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 433 | 89.22 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 437 | 89.22 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 440 | 89.22 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 441 | 89.22 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 444 | 89.22 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 445 | 89.22 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 446 | 89.22 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 448 | 89.22 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 453 | 89.22 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 454 | 89.22 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 457 | 89.22 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 460 | 89.22 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 465 | 89.22 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 475 | 89.26 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 476 | 89.27 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 481 | 89.33 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 497 | 89.37 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 499 | 89.37 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 504 | 89.40 | temperature | 25.0 | 270 | > th | dose independent | rect. | 1 | 1 |
| 570 | 89.57 | temperature | 25.0 | 90 | > th | dose independent | rect. | 1 | 5 |
| 574 | 89.65 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 580 | 89.71 | wind | 1.0 | 30 | < th | dose independent | rect. | 6 | 17 |
| 590 | 89.77 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 591 | 89.77 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 594 | 89.77 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 598 | 89.77 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 607 | 89.77 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 608 | 89.77 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 628 | 89.77 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 647 | 89.81 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 655 | 89.88 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 7 |
| 679 | 90.09 | wind | 1.0 | 30 | < th | dose dependent | rect. | 13 | 14 |
| 770 | 91.04 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 771 | 91.05 | humidity | 50.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 853 | 91.79 | wind | 1.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 927 | 92.53 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 974 | 92.82 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 994 | 92.97 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |