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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0267900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.0381) R2 : 0.558
β1 : 0.959 (0.143) R2dD : 0.0477 R2D : 0.00112
β2 : 2 (0.0915) R2dC : 0.475 R2C : 0.416
β3 : -0.73 (0.105) R2dE : 0.0514 R2E : -0.0182
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.614 (0.0815) R2dN8 : 0.0736 R2N8 : 0.0528
σ : 0.712
deviance : 233.54
__
_____
C
peak time of C : 23.9
E
wheather : temperature
threshold : 28.02
memory length : 1274
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
229.99 0.713 11.5 2.26 1.98 -1.56 -0.632 7.75 0.528 23.9 30.04 1310 -- --
232.66 0.71 11.6 0.98 2 -0.715 -0.276 -- 0.623 23.9 27.62 1274 -- --
231.72 0.709 11.5 2.26 1.98 -1.55 -- 7.59 0.528 23.9 30.04 1310 -- --
233.54 0.712 11.6 0.959 2 -0.73 -- -- 0.614 23.9 28.02 1274 -- --
421.22 0.961 11.5 1.21 -- -1.95 -- 2.41 0.745 -- 26.7 1632 -- --
255.8 0.75 11.6 0.715 1.89 -- -0.743 -- 0.657 23.8 -- -- -- --
258.2 0.752 11.6 0.745 1.89 -- -- -- 0.661 23.8 -- -- -- --
382.3 0.915 11.5 1.24 -- -2.24 -- -- 1.03 -- 18.14 6 -- --
256.38 0.746 11.6 -- 1.97 -0.574 -- -- 0.493 23.9 29.2 1244 -- --
483.03 1.03 11.6 0.801 -- -- -- -- 0.685 -- -- -- -- --
272.82 0.773 11.6 -- 1.9 -- -- -- 0.578 23.9 -- -- -- --
420.37 0.958 11.5 -- -- -1.89 -- -- 0.854 -- 18.8 6 -- --
499.96 1.04 11.6 -- -- -- -- -- 0.596 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 221.54 radiation 30 1440 > th dose independent rect. 16 16
3 223.17 radiation 20 1440 > th dose dependent rect. 16 16
4 223.77 radiation 20 1440 > th dose independent rect. 6 2
19 224.31 radiation 20 1440 > th dose dependent rect. 6 2
34 224.64 radiation 20 1440 < th dose independent rect. 16 16
35 224.76 humidity 80 43200 > th dose independent rect. 22 1
36 225.54 radiation 30 1440 < th dose independent rect. 19 13
37 225.57 humidity 80 43200 < th dose independent rect. 22 1
55 226.10 humidity 50 4320 < th dose independent rect. 15 2
58 226.22 humidity 50 4320 > th dose independent rect. 15 2
59 226.32 humidity 50 4320 < th dose dependent rect. 16 1
62 226.38 radiation 20 1440 < th dose independent rect. 6 2
63 226.39 radiation 20 1440 < th dose independent rect. 2 6
65 226.43 radiation 20 1440 < th dose independent rect. 4 4
70 226.48 radiation 20 1440 < th dose independent rect. 22 10
78 226.77 wind 1 43200 > th dose dependent rect. 2 14
80 226.80 wind 9 43200 < th dose dependent rect. 1 15
84 226.83 wind 1 43200 < th dose dependent rect. 8 2
85 226.83 wind 9 43200 < th dose dependent rect. 4 11
106 227.11 wind 3 43200 > th dose dependent rect. 23 18
133 227.28 humidity 50 4320 > th dose independent rect. 15 6
137 227.30 humidity 50 4320 > th dose independent rect. 15 18
153 227.33 humidity 50 4320 > th dose independent rect. 15 10
156 227.33 humidity 50 4320 > th dose independent rect. 15 12
159 227.33 humidity 50 4320 > th dose independent rect. 15 14
199 227.48 humidity 50 4320 > th dose independent rect. 13 4
208 227.52 wind 9 43200 < th dose dependent sin 3 NA
215 227.56 wind 1 43200 > th dose dependent sin 3 NA
220 227.63 temperature 30 1440 < th dose independent rect. 10 1
238 227.77 temperature 30 1440 < th dose independent rect. 9 3
240 227.79 wind 3 43200 > th dose independent rect. 2 13
256 227.87 wind 1 43200 < th dose dependent rect. 1 1
257 227.87 radiation 20 1440 < th dose dependent rect. 18 9
286 228.03 temperature 30 1440 > th dose independent rect. 10 1
288 228.05 temperature 30 1440 < th dose independent rect. 24 12
298 228.11 temperature 30 1440 > th dose independent rect. 9 4
299 228.11 temperature 30 1440 < th dose independent rect. 5 7
301 228.11 humidity 80 43200 < th dose dependent rect. 22 1
303 228.13 temperature 30 1440 < th dose independent rect. 2 10
310 228.14 radiation 30 14400 > th dose dependent rect. 16 1
327 228.15 temperature 30 1440 < th dose independent rect. 19 17
363 228.26 humidity 50 4320 < th dose independent sin 12 NA
370 228.34 humidity 50 4320 > th dose independent sin 12 NA
371 228.34 radiation 1 1440 > th dose dependent rect. 18 1
388 228.37 wind 9 43200 < th dose dependent rect. 9 5
393 228.40 radiation 10 1440 < th dose dependent rect. 18 5
400 228.44 wind 1 43200 > th dose dependent rect. 9 5
403 228.45 humidity 80 43200 < th dose dependent rect. 22 8
412 228.50 wind 3 43200 > th dose independent rect. 10 3
413 228.50 wind 3 43200 < th dose independent rect. 2 12
416 228.50 radiation 10 1440 < th dose dependent rect. 18 7
460 228.55 humidity 80 43200 < th dose dependent rect. 4 1
476 228.62 humidity 80 43200 < th dose dependent rect. 22 4
502 228.72 humidity 80 43200 < th dose dependent rect. 24 6
522 228.77 radiation 10 1440 < th dose dependent rect. 18 3
530 228.80 wind 3 43200 > th dose independent sin 4 NA
586 228.91 humidity 80 43200 < th dose dependent rect. 24 2
590 228.92 wind 3 43200 > th dose independent rect. 21 17
604 228.94 wind 3 43200 > th dose dependent rect. 15 23
605 228.95 temperature 30 1440 < th dose independent sin 8 NA
627 229.02 temperature 30 1440 > th dose independent sin 8 NA
663 229.07 wind 1 43200 < th dose independent rect. 8 2
698 229.12 wind 3 43200 > th dose dependent rect. 1 22
717 229.17 radiation 30 14400 > th dose independent rect. 16 1
738 229.20 wind 3 43200 > th dose dependent no NA NA
752 229.23 radiation 30 1440 < th dose independent rect. 15 19
755 229.24 wind 5 43200 < th dose independent rect. 1 16
789 229.28 wind 3 43200 > th dose dependent rect. 10 23
969 229.52 humidity 50 4320 < th dose dependent rect. 16 18
971 229.52 wind 3 43200 > th dose dependent rect. 7 23
973 229.53 wind 3 43200 < th dose independent sin 5 NA
996 229.53 wind 9 43200 > th dose dependent rect. 12 20