Os06g0267200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0267200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.14 | 0.358 | 8.3 | 0.148 | 1.5 | 1.07 | -0.114 | -0.627 | 0.268 | 15 | 23.7 | 4883 | -- | -- |
| 58.97 | 0.358 | 8.32 | -0.000625 | 1.5 | 1.14 | -0.148 | -- | 0.272 | 15 | 23.67 | 4889 | -- | -- |
| 58.19 | 0.355 | 8.3 | 0.149 | 1.5 | 1.07 | -- | -0.634 | 0.269 | 15 | 23.7 | 4881 | -- | -- |
| 58.72 | 0.357 | 8.33 | -0.0365 | 1.47 | 1.08 | -- | -- | 0.223 | 14.9 | 23.6 | 4884 | -- | -- |
| 166.74 | 0.601 | 8.29 | 0.0519 | -- | 1.41 | -- | -0.529 | 0.321 | -- | 24.12 | 2599 | -- | -- |
| 98.5 | 0.465 | 8.41 | -0.591 | 1.55 | -- | -0.0599 | -- | -0.146 | 14.9 | -- | -- | -- | -- |
| 98.52 | 0.465 | 8.41 | -0.593 | 1.54 | -- | -- | -- | -0.146 | 14.9 | -- | -- | -- | -- |
| 167.53 | 0.603 | 8.3 | -0.0794 | -- | 1.38 | -- | -- | 0.323 | -- | 24 | 2596 | -- | -- |
| 58.75 | 0.357 | 8.33 | -- | 1.49 | 1.08 | -- | -- | 0.217 | 15 | 23.6 | 4884 | -- | -- |
| 236.12 | 0.718 | 8.42 | -0.658 | -- | -- | -- | -- | -0.186 | -- | -- | -- | -- | -- |
| 107.77 | 0.486 | 8.4 | -- | 1.56 | -- | -- | -- | -0.0803 | 14.9 | -- | -- | -- | -- |
| 167.69 | 0.603 | 8.3 | -- | -- | 1.39 | -- | -- | 0.325 | -- | 24.05 | 2596 | -- | -- |
| 247.56 | 0.734 | 8.4 | -- | -- | -- | -- | -- | -0.113 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.25 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 10 | 58.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 12 | 58.77 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 17 | 58.96 | temperature | 20 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 19 | 58.97 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 24 | 59.22 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 32 | 59.37 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 16 |
| 47 | 59.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 49 | 59.67 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 53 | 59.72 | temperature | 10 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 60 | 59.77 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 76 | 59.91 | temperature | 20 | 4320 | > th | dose dependent | rect. | 15 | 20 |
| 78 | 59.94 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 95 | 60.01 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 7 |
| 115 | 60.06 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 21 |
| 118 | 60.07 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 7 |
| 177 | 60.16 | temperature | 25 | 4320 | > th | dose dependent | sin | 4 | NA |
| 179 | 60.16 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 191 | 60.17 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 23 |
| 199 | 60.18 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 23 |
| 212 | 60.20 | temperature | 20 | 4320 | > th | dose dependent | sin | 16 | NA |
| 245 | 60.24 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 279 | 60.28 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 282 | 60.28 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 352 | 60.34 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 14 |
| 355 | 60.35 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 402 | 60.38 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 17 |
| 406 | 60.39 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 445 | 60.42 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 471 | 60.43 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 21 |
| 476 | 60.44 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 524 | 60.47 | temperature | 25 | 4320 | > th | dose dependent | rect. | 9 | 2 |
| 614 | 60.54 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 796 | 60.65 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 21 |
| 822 | 60.68 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 21 |
| 858 | 60.71 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 909 | 60.77 | wind | 5 | 43200 | > th | dose dependent | rect. | 4 | 12 |
| 992 | 60.88 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 4 |