Os06g0265400 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0265400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Transcription factor HBP-1b(C38) (Fragment).

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.66	(0.0381)	R²	:	0.382
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	2.35	(0.14)	R²_dE	:	0.403	R²_E	:	0.363
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.262	(0.0819)	R²_dN8	:	0.0186	R²_N8	:	-0.021
σ	:	0.712
deviance	:	233.65
__

_____

C
peak time of C	:	--
E
wheather	:	temperature
threshold	:	19.42
memory length	:	158
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	16.3
open length of G	:	15.4

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
225.26	0.705	3.65	-0.258	0.237	2.5	1.75	-0.191	-0.285	6.77	19.33	209	15.5	16.1
223.91	0.697	3.65	-0.215	0.23	2.5	1.81	--	-0.279	6.76	19.66	179	15.9	15.5
231.33	0.708	3.67	-0.266	0.234	2.52	--	-0.528	-0.319	7.02	19.64	185	15.9	15.5
231.66	0.709	3.66	-0.174	0.209	2.49	--	--	-0.294	7.91	19.43	176	16	15.4
232.6	0.71	3.67	-0.259	--	2.39	--	-0.682	-0.304	--	19.45	158	16.2	15.5
338.29	0.862	3.6	0.149	0.783	--	-0.0167	--	0.066	23.8	--	--	--	--
338.29	0.861	3.6	0.15	0.783	--	--	--	0.0661	23.8	--	--	--	--
233.01	0.711	3.66	-0.156	--	2.37	--	--	-0.275	--	19.42	157	16.3	15.5
232.44	0.71	3.65	--	0.19	2.44	--	--	-0.268	7.55	19.54	167	16.1	15.4
376.89	0.907	3.58	0.173	--	--	--	--	0.076	--	--	--	--	--
338.88	0.861	3.6	--	0.785	--	--	--	0.0493	23.8	--	--	--	--
233.65	0.712	3.66	--	--	2.35	--	--	-0.262	--	19.42	158	16.3	15.4
377.68	0.907	3.58	--	--	--	--	--	0.0568	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	228.52	temperature	20	270	> th	dose dependent	rect.	15	16
4	230.92	temperature	20	90	> th	dose dependent	rect.	17	16
5	231.98	temperature	20	90	> th	dose dependent	rect.	17	14
23	240.40	temperature	20	270	> th	dose dependent	rect.	15	7
73	249.52	temperature	20	90	> th	dose dependent	rect.	17	5
78	250.25	temperature	20	90	> th	dose dependent	rect.	17	7
79	250.27	temperature	20	270	> th	dose dependent	rect.	16	3
103	253.08	temperature	20	270	> th	dose dependent	sin	15	NA
108	253.43	temperature	20	270	> th	dose dependent	rect.	17	1
118	254.34	temperature	25	270	> th	dose independent	rect.	15	5
131	255.41	temperature	20	720	> th	dose dependent	sin	18	NA
134	255.62	temperature	25	270	> th	dose independent	rect.	14	7
151	256.82	temperature	20	720	> th	dose dependent	rect.	10	15
153	256.86	temperature	20	720	> th	dose dependent	rect.	10	17
163	257.38	radiation	1	720	> th	dose independent	rect.	18	1
189	257.59	temperature	30	720	< th	dose independent	rect.	15	16
202	257.84	temperature	30	720	< th	dose independent	sin	12	NA
320	260.16	radiation	1	720	> th	dose dependent	rect.	18	1
396	261.12	radiation	1	1440	< th	dose dependent	rect.	18	11
464	261.83	radiation	1	1440	< th	dose dependent	rect.	18	1
473	261.98	radiation	1	1440	< th	dose dependent	rect.	18	7
556	262.80	temperature	20	1440	> th	dose dependent	rect.	6	1
557	262.80	humidity	90	90	< th	dose dependent	rect.	17	4
591	263.33	humidity	90	270	< th	dose dependent	rect.	17	1
620	263.83	temperature	30	720	> th	dose independent	sin	12	NA
708	264.93	radiation	10	1440	> th	dose dependent	rect.	16	1
725	265.12	temperature	30	270	< th	dose dependent	rect.	15	11
733	265.18	temperature	20	30	> th	dose independent	rect.	17	16
753	265.28	radiation	10	1440	> th	dose dependent	rect.	16	14
781	265.45	radiation	1	14400	< th	dose dependent	rect.	18	1
788	265.50	temperature	30	720	< th	dose independent	rect.	15	8
789	265.50	temperature	30	720	< th	dose independent	rect.	14	20
801	265.57	radiation	1	14400	< th	dose dependent	rect.	18	5
811	265.62	radiation	1	14400	< th	dose dependent	rect.	18	11
829	265.69	radiation	30	14400	> th	dose independent	rect.	16	16
851	265.90	temperature	25	1440	> th	dose independent	rect.	6	1
899	266.31	radiation	1	14400	< th	dose dependent	rect.	18	9
909	266.36	temperature	30	1440	> th	dose independent	rect.	14	21
961	266.78	wind	7	43200	< th	dose independent	rect.	5	9
987	266.88	temperature	25	1440	< th	dose independent	rect.	6	1
988	266.91	temperature	30	1440	> th	dose dependent	rect.	14	1