Os06g0265000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Asparagine synthetase.
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Os06g0265000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Asparagine synthetase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.63 | 0.268 | 11.9 | -0.141 | 0.721 | 0.965 | -0.55 | -1.51 | -0.177 | 21.8 | 22.23 | 145 | -- | -- |
| 33.98 | 0.272 | 11.9 | 0.124 | 0.704 | 0.844 | -0.506 | -- | -0.105 | 21.4 | 20.33 | 180 | -- | -- |
| 33.72 | 0.27 | 11.9 | -0.0817 | 0.716 | 0.921 | -- | -1.26 | -0.164 | 21.6 | 21.95 | 163 | -- | -- |
| 34.59 | 0.274 | 11.9 | 0.127 | 0.743 | 0.848 | -- | -- | -0.108 | 21.5 | 20.26 | 139 | -- | -- |
| 48.62 | 0.325 | 11.9 | -0.285 | -- | 1.22 | -- | -1.68 | -0.267 | -- | 22.23 | 610 | -- | -- |
| 45.76 | 0.317 | 11.9 | 0.307 | 0.822 | -- | -0.374 | -- | 0.0342 | 20 | -- | -- | -- | -- |
| 46.17 | 0.318 | 11.9 | 0.318 | 0.823 | -- | -- | -- | 0.0341 | 20 | -- | -- | -- | -- |
| 50.56 | 0.331 | 11.9 | 0.085 | -- | 1.07 | -- | -- | -0.0972 | -- | 23.76 | 606 | -- | -- |
| 35 | 0.276 | 11.9 | -- | 0.744 | 0.878 | -- | -- | -0.124 | 21.5 | 20.1 | 141 | -- | -- |
| 83.14 | 0.426 | 11.8 | 0.309 | -- | -- | -- | -- | 0.0234 | -- | -- | -- | -- | -- |
| 48.83 | 0.327 | 11.9 | -- | 0.821 | -- | -- | -- | -0.0013 | 20 | -- | -- | -- | -- |
| 50.74 | 0.332 | 11.9 | -- | -- | 1.09 | -- | -- | -0.115 | -- | 23.71 | 612 | -- | -- |
| 85.66 | 0.432 | 11.9 | -- | -- | -- | -- | -- | -0.0109 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.01 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 13 | 32.51 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 15 | 32.61 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 14 |
| 29 | 32.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 51 | 33.05 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 61 | 33.13 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 71 | 33.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 78 | 33.35 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 81 | 33.36 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 83 | 33.37 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 84 | 33.38 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 141 | 33.71 | temperature | 25 | 90 | > th | dose independent | rect. | 7 | 13 |
| 145 | 33.72 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 147 | 33.73 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 15 |
| 155 | 33.77 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 166 | 33.82 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 198 | 33.93 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 12 |
| 223 | 34.01 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 245 | 34.08 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 9 |
| 253 | 34.11 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 22 |
| 274 | 34.15 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 18 |
| 314 | 34.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 359 | 34.33 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 21 |
| 364 | 34.34 | temperature | 20 | 270 | > th | dose dependent | sin | 0 | NA |
| 465 | 34.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 501 | 34.55 | radiation | 10 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 511 | 34.57 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 524 | 34.59 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 528 | 34.60 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 543 | 34.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 14 |
| 570 | 34.66 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 18 |
| 572 | 34.66 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 20 |
| 618 | 34.70 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 703 | 34.78 | temperature | 20 | 10 | > th | dose dependent | sin | 21 | NA |
| 710 | 34.79 | radiation | 20 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 727 | 34.79 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 11 |
| 791 | 34.85 | radiation | 10 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 818 | 34.87 | temperature | 30 | 10 | < th | dose dependent | sin | 21 | NA |
| 822 | 34.87 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 16 |
| 960 | 35.01 | temperature | 25 | 270 | < th | dose independent | sin | 23 | NA |
| 991 | 35.04 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 4 |
| 995 | 35.04 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 4 |