Os06g0264500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TGF-beta receptor, type I/II extracellular region family protein.
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Os06g0264500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TGF-beta receptor, type I/II extracellular region family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 269.09 | 0.771 | 9.37 | 0.836 | 1.63 | 6.83 | -0.59 | 13.4 | 0.324 | 1.64 | 0.6811 | 1496 | -- | -- |
| 297.64 | 0.804 | 9.16 | 1.85 | 0.623 | 4.79 | 0.934 | -- | 0.54 | 0.0617 | 2.595 | 1635 | -- | -- |
| 270.32 | 0.766 | 9.35 | 0.904 | 1.61 | 6.81 | -- | 13.1 | 0.349 | 1.62 | 0.71 | 1495 | -- | -- |
| 302.27 | 0.81 | 9.15 | 1.89 | 0.66 | 4.87 | -- | -- | 0.608 | 0.369 | 2.65 | 1620 | -- | -- |
| 310.89 | 0.821 | 9.28 | 1.83 | -- | 6.46 | -- | 5.89 | 0.65 | -- | 1.667 | 1598 | -- | -- |
| 482.88 | 1.03 | 9.3 | 1.19 | 2.36 | -- | 0.65 | -- | 0.0265 | 1.04 | -- | -- | -- | -- |
| 484.62 | 1.03 | 9.3 | 1.17 | 2.36 | -- | -- | -- | 0.0226 | 1.08 | -- | -- | -- | -- |
| 312.78 | 0.824 | 9.13 | 1.98 | -- | 5.64 | -- | -- | 0.668 | -- | 2.58 | 1645 | -- | -- |
| 385.77 | 0.915 | 9.17 | -- | 1.16 | 3.73 | -- | -- | 0.416 | 0.97 | 4.639 | 1602 | -- | -- |
| 831.61 | 1.35 | 9.26 | 1.26 | -- | -- | -- | -- | 0.0691 | -- | -- | -- | -- | -- |
| 520.76 | 1.07 | 9.33 | -- | 2.38 | -- | -- | -- | -0.108 | 1.1 | -- | -- | -- | -- |
| 409.4 | 0.942 | 9.19 | -- | -- | 5.04 | -- | -- | 0.405 | -- | 3.114 | 1675 | -- | -- |
| 873.53 | 1.38 | 9.29 | -- | -- | -- | -- | -- | -0.0708 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 279.15 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 22 |
| 5 | 279.89 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 12 | 280.64 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 16 |
| 48 | 281.59 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 19 |
| 75 | 282.22 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 77 | 282.25 | temperature | 25 | 1440 | > th | dose dependent | sin | 23 | NA |
| 105 | 282.56 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 106 | 282.57 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 111 | 282.60 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 116 | 282.66 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 121 | 282.71 | radiation | 1 | 1440 | < th | dose dependent | sin | 13 | NA |
| 194 | 283.43 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 198 | 283.49 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 214 | 283.81 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 230 | 284.22 | radiation | 40 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 253 | 284.63 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 337 | 286.95 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 9 |
| 378 | 287.95 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 397 | 288.28 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 13 |
| 398 | 288.31 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 405 | 288.43 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 22 |
| 438 | 289.35 | radiation | 1 | 1440 | < th | dose dependent | sin | 0 | NA |
| 458 | 289.79 | radiation | 1 | 1440 | < th | dose independent | sin | 13 | NA |
| 474 | 290.48 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 20 |
| 511 | 291.61 | radiation | 1 | 1440 | > th | dose independent | rect. | 17 | 13 |
| 533 | 292.17 | radiation | 1 | 1440 | > th | dose independent | sin | 13 | NA |
| 538 | 292.43 | radiation | 1 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 543 | 292.68 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 552 | 292.92 | humidity | 90 | 1440 | < th | dose dependent | rect. | 17 | 3 |
| 560 | 293.07 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 562 | 293.09 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 570 | 293.49 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 580 | 293.60 | humidity | 50 | 1440 | > th | dose dependent | rect. | 17 | 3 |
| 587 | 293.77 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 14 |
| 588 | 293.79 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 11 |
| 595 | 293.84 | humidity | 50 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 621 | 294.61 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 642 | 295.30 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 669 | 295.56 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 679 | 295.77 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 19 |
| 681 | 295.79 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 684 | 295.81 | temperature | 30 | 1440 | < th | dose independent | sin | 1 | NA |
| 686 | 295.84 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 706 | 296.07 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 715 | 296.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 735 | 296.28 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 786 | 296.76 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 791 | 296.80 | radiation | 1 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 792 | 296.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 21 |
| 794 | 296.82 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 18 |
| 802 | 296.83 | radiation | 1 | 1440 | < th | dose independent | rect. | 22 | 23 |
| 842 | 296.90 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 877 | 297.03 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 895 | 297.06 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 901 | 297.07 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 23 |