Os06g0257200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Signal recognition particle 9 kDa family protein.
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Os06g0257200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Signal recognition particle 9 kDa family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.19 | 0.211 | 10.9 | -0.554 | 0.438 | 0.777 | 0.219 | -0.332 | -0.241 | 17.2 | 20.09 | 10 | -- | -- |
| 20.28 | 0.21 | 10.9 | -0.499 | 0.44 | 0.766 | 0.143 | -- | -0.226 | 17.2 | 19.73 | 9 | -- | -- |
| 20.29 | 0.21 | 10.9 | -0.535 | 0.438 | 0.785 | -- | -0.195 | -0.237 | 17.2 | 19.8 | 9 | -- | -- |
| 20.33 | 0.21 | 10.9 | -0.502 | 0.439 | 0.774 | -- | -- | -0.227 | 17.2 | 19.73 | 9 | -- | -- |
| 26.59 | 0.24 | 10.9 | -0.641 | -- | 1.08 | -- | -0.516 | -0.293 | -- | 20.64 | 128 | -- | -- |
| 28.78 | 0.251 | 10.9 | -0.342 | 0.674 | -- | 0.349 | -- | -0.0959 | 16.1 | -- | -- | -- | -- |
| 29.12 | 0.253 | 10.9 | -0.338 | 0.677 | -- | -- | -- | -0.094 | 16.1 | -- | -- | -- | -- |
| 26.79 | 0.241 | 10.9 | -0.585 | -- | 1.06 | -- | -- | -0.281 | -- | 20.2 | 138 | -- | -- |
| 26.33 | 0.239 | 10.9 | -- | 0.49 | 0.588 | -- | -- | -0.14 | 16.9 | 21.62 | 2 | -- | -- |
| 53.97 | 0.343 | 10.9 | -0.365 | -- | -- | -- | -- | -0.112 | -- | -- | -- | -- | -- |
| 32.13 | 0.265 | 10.9 | -- | 0.683 | -- | -- | -- | -0.0564 | 16.1 | -- | -- | -- | -- |
| 34.71 | 0.274 | 10.9 | -- | -- | 0.915 | -- | -- | -0.16 | -- | 23.76 | 117 | -- | -- |
| 57.48 | 0.354 | 10.9 | -- | -- | -- | -- | -- | -0.0715 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.74 | temperature | 20 | 90 | > th | dose dependent | rect. | 5 | 21 |
| 4 | 19.88 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 7 | 20.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 12 | 20.04 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 20 | 20.20 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 23 | 20.22 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 25 | 20.24 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 26 | 20.24 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 32 | 20.32 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 34 | 20.33 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 47 | 20.48 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 48 | 20.50 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 60 | 20.58 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 61 | 20.58 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 70 | 20.63 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 78 | 20.67 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 89 | 20.73 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 91 | 20.74 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 96 | 20.76 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 100 | 20.77 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 102 | 20.78 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 121 | 20.84 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 23 |
| 131 | 20.88 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 133 | 20.89 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 163 | 21.02 | temperature | 20 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 196 | 21.15 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 220 | 21.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 248 | 21.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 255 | 21.37 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 268 | 21.39 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 278 | 21.40 | temperature | 30 | 10 | < th | dose dependent | sin | 22 | NA |
| 280 | 21.40 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 282 | 21.41 | temperature | 20 | 90 | > th | dose dependent | sin | 0 | NA |
| 297 | 21.45 | temperature | 20 | 10 | > th | dose dependent | sin | 23 | NA |
| 315 | 21.49 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 16 |
| 332 | 21.52 | temperature | 10 | 90 | > th | dose dependent | sin | 23 | NA |
| 341 | 21.53 | temperature | 10 | 10 | > th | dose dependent | sin | 22 | NA |
| 443 | 21.66 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 446 | 21.66 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 659 | 21.92 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 724 | 21.99 | temperature | 30 | 720 | < th | dose dependent | sin | 3 | NA |
| 747 | 22.02 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 12 |