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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0256900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Endo-beta-1,4-glucanase precursor (EC 3.2.1.4).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.07 (0.0234) R2 : 0.0149
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.129 (0.0492) R2dN8 : 0.0192 R2N8 : 0.0149
σ : 0.44
deviance : 88.87
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
85.89 0.435 3 0.493 0.155 -0.189 0.101 2.77 0.186 8.9 30 1229 -- --
86.84 0.434 3.06 -0.0462 0.169 0.146 0.0795 -- 0.157 8.73 32.58 2281 -- --
85.93 0.432 3 0.494 0.155 -0.188 -- 2.76 0.186 8.94 29.99 1228 -- --
86.86 0.434 3.06 -0.0494 0.167 0.142 -- -- 0.148 8.73 32.52 2281 -- --
87.26 0.435 3 0.515 -- -0.208 -- 2.8 0.183 -- 30 1269 -- --
87.47 0.438 3.07 -0.02 0.158 -- 0.0736 -- 0.126 8.39 -- -- -- --
87.48 0.438 3.07 -0.0176 0.157 -- -- -- 0.126 8.47 -- -- -- --
88.3 0.438 3.07 -0.0313 -- 0.104 -- -- 0.151 -- 32.2 1376 -- --
86.92 0.434 3.06 -- 0.166 0.132 -- -- 0.151 8.74 32.52 2281 -- --
88.87 0.44 3.07 -0.0169 -- -- -- -- 0.127 -- -- -- -- --
87.49 0.438 3.07 -- 0.157 -- -- -- 0.128 8.48 -- -- -- --
88.34 0.438 3.07 -- -- 0.1 -- -- 0.152 -- 32.1 1334 -- --
88.87 0.44 3.07 -- -- -- -- -- 0.129 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 79.58 wind 1.0 30 < th dose independent rect. 10 1
2 79.58 temperature 10.0 1440 > th dose independent rect. 11 1
6 79.58 atmosphere 995.0 1440 > th dose independent rect. 11 1
9 79.58 precipitation 0.1 1440 < th dose independent rect. 11 1
10 79.58 temperature 10.0 1440 > th dose independent rect. 12 23
13 79.58 wind 1.0 30 < th dose dependent rect. 10 1
14 79.58 precipitation 0.1 1440 < th dose dependent rect. 11 1
15 79.80 humidity 70.0 30 < th dose independent rect. 10 1
16 80.07 atmosphere 1005.0 30 > th dose independent rect. 10 1
17 80.07 radiation 40.0 30 < th dose independent rect. 10 1
18 80.09 atmosphere 1010.0 30 < th dose independent rect. 10 1
19 80.10 temperature 25.0 30 > th dose dependent rect. 10 1
22 80.20 temperature 25.0 30 > th dose independent rect. 10 1
23 80.20 humidity 70.0 30 < th dose dependent rect. 10 1
24 80.24 atmosphere 1000.0 30 > th dose dependent rect. 10 1
25 80.26 temperature 30.0 30 < th dose independent rect. 10 1
28 80.29 radiation 20.0 30 > th dose independent rect. 10 1
34 80.43 wind 5.0 30 < th dose dependent rect. 10 1
39 80.48 humidity 60.0 30 > th dose independent rect. 10 1
41 80.51 wind 5.0 30 < th dose independent rect. 10 1
44 80.54 temperature 10.0 30 > th dose independent rect. 10 1
47 80.54 humidity 90.0 30 < th dose independent rect. 10 1
51 80.54 precipitation 0.1 30 < th dose independent rect. 10 1
52 80.54 temperature 10.0 30 > th dose independent rect. 11 23
53 80.54 precipitation 0.1 30 < th dose dependent rect. 10 1
55 80.58 wind 1.0 30 > th dose independent rect. 10 1
56 80.60 radiation 40.0 30 < th dose dependent rect. 10 1
58 80.86 radiation 1.0 30 > th dose dependent rect. 10 1
61 81.15 humidity 50.0 30 > th dose dependent rect. 10 1
62 81.32 atmosphere 1015.0 30 < th dose dependent rect. 10 1
64 81.48 wind 1.0 30 > th dose dependent rect. 10 1
83 82.68 wind 9.0 30 < th dose independent rect. 11 23
110 83.20 humidity 80.0 30 < th dose independent rect. 12 1
112 83.28 temperature 10.0 1440 > th dose independent rect. 13 1
116 83.28 atmosphere 995.0 1440 > th dose independent rect. 13 1
119 83.28 temperature 10.0 1440 > th dose independent rect. 14 23
122 83.43 radiation 30.0 30 > th dose independent rect. 12 1
123 83.47 wind 7.0 30 < th dose independent rect. 12 1
124 83.47 atmosphere 1010.0 30 < th dose independent rect. 12 1
125 83.47 temperature 15.0 30 > th dose dependent rect. 12 1
127 83.50 humidity 60.0 30 > th dose independent rect. 12 1
132 83.52 radiation 10.0 30 > th dose dependent rect. 12 1
135 83.56 temperature 20.0 30 > th dose independent rect. 12 1
136 83.56 atmosphere 1015.0 30 < th dose dependent rect. 12 1
140 83.64 wind 9.0 30 < th dose dependent rect. 12 1
145 83.69 wind 1.0 30 > th dose independent rect. 12 1
147 83.69 temperature 10.0 30 > th dose independent rect. 12 1
149 83.69 atmosphere 995.0 30 > th dose independent rect. 12 1
153 83.69 precipitation 0.1 30 < th dose independent rect. 12 1
154 83.69 temperature 10.0 30 > th dose independent rect. 13 23
155 83.69 precipitation 0.1 30 < th dose dependent rect. 12 1
161 83.83 humidity 90.0 30 < th dose dependent rect. 12 1
162 83.90 atmosphere 995.0 30 > th dose dependent rect. 12 1
165 84.00 wind 1.0 30 > th dose dependent rect. 12 1
166 84.00 humidity 50.0 30 > th dose dependent rect. 12 1
169 84.07 temperature 30.0 30 < th dose independent rect. 12 1
171 84.14 temperature 30.0 10 < th dose independent rect. 11 23
180 84.40 temperature 25.0 270 > th dose dependent rect. 10 1
181 84.41 precipitation 0.1 30 < th dose independent rect. 11 23
182 84.41 precipitation 0.1 30 < th dose dependent rect. 11 23
192 84.68 atmosphere 995.0 30 > th dose independent rect. 11 23
208 85.03 wind 9.0 30 < th dose independent rect. 13 23
245 85.34 temperature 25.0 10 > th dose dependent rect. 16 18
247 85.37 temperature 25.0 10 > th dose dependent rect. 10 5
258 85.46 temperature 25.0 270 > th dose dependent rect. 24 11
259 85.47 radiation 20.0 10 < th dose independent rect. 6 6
260 85.47 precipitation 0.1 30 < th dose independent rect. 13 23
261 85.47 precipitation 0.1 30 < th dose dependent rect. 13 23
267 85.49 temperature 30.0 14400 > th dose dependent rect. 18 15
273 85.52 radiation 20.0 10 > th dose independent rect. 12 23
276 85.53 temperature 30.0 14400 < th dose independent rect. 6 3
282 85.56 temperature 30.0 14400 < th dose independent rect. 24 9
283 85.56 temperature 30.0 14400 < th dose independent rect. 19 14
294 85.58 temperature 30.0 43200 > th dose dependent rect. 18 1
321 85.59 temperature 25.0 30 > th dose dependent rect. 24 9
331 85.60 temperature 30.0 14400 > th dose independent rect. 18 15
337 85.63 radiation 20.0 10 < th dose independent rect. 6 20
344 85.64 temperature 30.0 14400 > th dose independent rect. 8 1
360 85.65 atmosphere 1000.0 30 > th dose independent rect. 13 23
366 85.66 temperature 30.0 10 < th dose independent rect. 5 23
393 85.69 temperature 10.0 1440 > th dose independent rect. 6 7
396 85.69 atmosphere 995.0 1440 > th dose independent rect. 6 7
406 85.69 temperature 10.0 1440 > th dose independent rect. 13 17
412 85.70 wind 9.0 4320 > th dose dependent rect. 13 1
414 85.70 atmosphere 1000.0 10 > th dose dependent rect. 6 4
417 85.71 radiation 20.0 10 < th dose independent rect. 6 4
418 85.71 temperature 25.0 90 > th dose independent rect. 9 6
419 85.71 temperature 30.0 14400 > th dose dependent rect. 8 2
435 85.72 wind 1.0 10 < th dose independent rect. 2 1
440 85.73 humidity 70.0 10 > th dose independent rect. 6 6
446 85.73 radiation 30.0 10 > th dose dependent rect. 12 20
448 85.74 radiation 20.0 90 < th dose independent rect. 5 7
449 85.74 wind 3.0 10 < th dose dependent rect. 2 1
456 85.74 atmosphere 1000.0 90 > th dose dependent rect. 5 4
539 85.77 radiation 30.0 10 < th dose dependent rect. 6 6
545 85.78 temperature 25.0 90 > th dose independent rect. 5 4
547 85.78 atmosphere 1015.0 30 < th dose dependent rect. 2 1
549 85.78 radiation 30.0 10 > th dose dependent rect. 12 4
570 85.79 temperature 25.0 30 < th dose independent rect. 2 1
577 85.79 atmosphere 1005.0 270 > th dose dependent rect. 5 1
586 85.80 temperature 30.0 30 < th dose dependent rect. 2 1
595 85.80 radiation 40.0 90 < th dose dependent rect. 5 7
606 85.80 temperature 25.0 270 > th dose dependent rect. 19 18
610 85.81 temperature 10.0 30 > th dose independent rect. 2 1
613 85.81 humidity 50.0 30 > th dose independent rect. 2 1
617 85.81 atmosphere 995.0 30 > th dose independent rect. 2 1
618 85.81 atmosphere 1010.0 30 < th dose independent rect. 2 1
620 85.81 radiation 1.0 30 < th dose independent rect. 2 1
625 85.81 precipitation 0.1 30 < th dose independent rect. 2 1
627 85.81 temperature 10.0 30 > th dose independent rect. 3 23
629 85.81 radiation 1.0 30 < th dose dependent rect. 2 1
634 85.81 precipitation 0.1 30 < th dose dependent rect. 2 1
644 85.82 humidity 70.0 90 > th dose independent rect. 5 6
649 85.82 humidity 50.0 30 > th dose dependent rect. 2 1
661 85.83 atmosphere 1005.0 30 > th dose independent rect. 2 1
665 85.83 humidity 60.0 270 > th dose independent rect. 24 13
666 85.83 wind 9.0 30 < th dose independent rect. 3 23
668 85.83 temperature 10.0 30 > th dose dependent rect. 2 1
670 85.83 atmosphere 1005.0 30 > th dose dependent rect. 2 1
678 85.84 wind 7.0 4320 < th dose independent rect. 5 1
712 85.84 atmosphere 995.0 30 > th dose dependent rect. 2 1
726 85.85 radiation 20.0 10 < th dose independent rect. 6 22
760 85.87 humidity 70.0 10 > th dose independent rect. 6 20
787 85.88 temperature 25.0 4320 > th dose independent rect. 5 1
788 85.88 temperature 30.0 14400 > th dose independent rect. 18 1
789 85.88 temperature 25.0 4320 < th dose independent rect. 5 1
816 85.89 radiation 1.0 90 > th dose independent rect. 13 23
847 85.90 temperature 30.0 1440 > th dose independent rect. 15 2
863 85.90 radiation 40.0 10 < th dose dependent rect. 6 20
868 85.91 humidity 70.0 10 > th dose independent rect. 6 4
894 85.91 temperature 20.0 270 > th dose dependent rect. 5 1
911 85.92 temperature 30.0 14400 > th dose dependent sin 10 NA
979 85.93 radiation 1.0 30 > th dose independent rect. 16 20
981 85.93 atmosphere 995.0 30 > th dose dependent rect. 12 17