Os06g0255000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 2OG-Fe(II) oxygenase domain containing protein.
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Os06g0255000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 2OG-Fe(II) oxygenase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.16 | 0.444 | 9.7 | 0.365 | 0.707 | -1.36 | -0.618 | -0.931 | 0.138 | 14.1 | 13.51 | 89 | -- | -- |
| 90.71 | 0.444 | 9.71 | 0.327 | 0.798 | -1.29 | 0.165 | -- | 0.131 | 13.5 | 15.2 | 97 | -- | -- |
| 89.58 | 0.441 | 9.7 | 0.371 | 0.771 | -1.31 | -- | -0.498 | 0.137 | 13.9 | 13.63 | 87 | -- | -- |
| 90.79 | 0.444 | 9.7 | 0.352 | 0.693 | -1.38 | -- | -- | 0.133 | 13.9 | 14 | 97 | -- | -- |
| 94.88 | 0.454 | 9.7 | 0.341 | -- | -1.87 | -- | -0.47 | 0.132 | -- | 12.19 | 120 | -- | -- |
| 118.9 | 0.511 | 9.66 | 0.376 | 2.15 | -- | 0.569 | -- | 0.218 | 13.1 | -- | -- | -- | -- |
| 120.24 | 0.514 | 9.66 | 0.397 | 2.15 | -- | -- | -- | 0.221 | 13.1 | -- | -- | -- | -- |
| 95.95 | 0.456 | 9.71 | 0.333 | -- | -1.88 | -- | -- | 0.127 | -- | 12.44 | 122 | -- | -- |
| 93.98 | 0.452 | 9.71 | -- | 0.672 | -1.4 | -- | -- | 0.0944 | 13.8 | 14.48 | 101 | -- | -- |
| 405.91 | 0.941 | 9.69 | 0.315 | -- | -- | -- | -- | 0.179 | -- | -- | -- | -- | -- |
| 124.39 | 0.522 | 9.67 | -- | 2.14 | -- | -- | -- | 0.177 | 13.1 | -- | -- | -- | -- |
| 98.82 | 0.463 | 9.71 | -- | -- | -1.89 | -- | -- | 0.0896 | -- | 12.99 | 122 | -- | -- |
| 408.54 | 0.943 | 9.7 | -- | -- | -- | -- | -- | 0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 20 |
| 39 | 89.86 | radiation | 10 | 90 | < th | dose dependent | sin | 0 | NA |
| 42 | 90.18 | temperature | 10 | 90 | > th | dose dependent | rect. | 6 | 11 |
| 43 | 90.19 | radiation | 10 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 46 | 90.31 | radiation | 20 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 48 | 90.67 | radiation | 20 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 50 | 90.75 | radiation | 10 | 90 | < th | dose dependent | no | NA | NA |
| 52 | 90.79 | radiation | 20 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 65 | 91.03 | radiation | 10 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 67 | 91.07 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 74 | 91.21 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 20 |
| 77 | 91.25 | radiation | 20 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 79 | 91.26 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 80 | 91.29 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 21 |
| 87 | 91.40 | radiation | 20 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 88 | 91.42 | radiation | 20 | 10 | < th | dose dependent | no | NA | NA |
| 90 | 91.47 | radiation | 20 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 94 | 91.56 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 20 |
| 117 | 91.92 | temperature | 25 | 30 | < th | dose independent | rect. | 3 | 19 |
| 120 | 91.98 | radiation | 10 | 90 | < th | dose independent | rect. | 24 | 23 |
| 127 | 92.10 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 128 | 92.12 | radiation | 10 | 90 | < th | dose dependent | rect. | 3 | 19 |
| 157 | 92.55 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 21 |
| 169 | 92.74 | radiation | 20 | 10 | < th | dose dependent | rect. | 2 | 21 |
| 211 | 93.21 | temperature | 15 | 10 | > th | dose dependent | sin | 1 | NA |
| 235 | 93.39 | radiation | 10 | 90 | < th | dose independent | rect. | 7 | 23 |
| 239 | 93.43 | radiation | 20 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 263 | 93.66 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 10 |
| 264 | 93.66 | radiation | 10 | 90 | > th | dose independent | rect. | 17 | 23 |
| 289 | 93.81 | radiation | 10 | 90 | > th | dose independent | no | NA | NA |
| 290 | 93.81 | radiation | 10 | 90 | > th | dose independent | rect. | 6 | 12 |
| 457 | 94.41 | radiation | 10 | 10 | < th | dose dependent | rect. | 5 | 17 |
| 519 | 94.74 | radiation | 1 | 90 | > th | dose independent | sin | 0 | NA |
| 523 | 94.75 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 539 | 94.84 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 22 |
| 544 | 94.85 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 13 |
| 556 | 94.91 | radiation | 10 | 10 | < th | dose independent | rect. | 2 | 21 |
| 557 | 94.92 | radiation | 10 | 90 | < th | dose independent | rect. | 16 | 23 |
| 666 | 95.38 | radiation | 10 | 90 | < th | dose independent | rect. | 12 | 23 |
| 752 | 95.72 | radiation | 1 | 90 | < th | dose independent | sin | 0 | NA |
| 756 | 95.75 | radiation | 10 | 10 | < th | dose independent | rect. | 24 | 23 |
| 758 | 95.75 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 13 |
| 769 | 95.78 | radiation | 20 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 804 | 95.91 | radiation | 10 | 90 | < th | dose independent | rect. | 9 | 21 |
| 821 | 95.98 | radiation | 10 | 90 | < th | dose independent | no | NA | NA |
| 822 | 95.98 | radiation | 10 | 90 | < th | dose independent | rect. | 9 | 23 |
| 907 | 96.26 | radiation | 20 | 270 | < th | dose independent | rect. | 15 | 14 |
| 999 | 96.60 | radiation | 40 | 270 | < th | dose dependent | rect. | 10 | 9 |