Os06g0249500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os06g0249500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 188.22 | 0.645 | 4.05 | 2.13 | 2.38 | 0.285 | 1.55 | -2.64 | 0.416 | 17.7 | 23.26 | 835 | -- | -- |
| 201 | 0.66 | 4.15 | 1.7 | 2.23 | 1.11 | 2.51 | -- | 0.182 | 17.8 | 17.7 | 8310 | -- | -- |
| 191.75 | 0.645 | 4.04 | 2.21 | 2.42 | 0.347 | -- | -2.79 | 0.464 | 17.6 | 23.21 | 594 | -- | -- |
| 210.21 | 0.675 | 4.12 | 1.69 | 2.3 | 1.14 | -- | -- | 0.251 | 17.6 | 17.5 | 8028 | -- | -- |
| 475.66 | 1.02 | 4.17 | 1.19 | -- | -0.513 | -- | -0.963 | -0.183 | -- | 25 | 1229 | -- | -- |
| 208.94 | 0.678 | 4.17 | 1.1 | 2.35 | -- | 2 | -- | 0.0532 | 17.7 | -- | -- | -- | -- |
| 218.62 | 0.692 | 4.16 | 1.09 | 2.36 | -- | -- | -- | 0.0622 | 17.6 | -- | -- | -- | -- |
| 443.48 | 0.985 | 4.14 | 0.808 | -- | -0.932 | -- | -- | -0.0443 | -- | 28.6 | 2006 | -- | -- |
| 248.96 | 0.739 | 4.19 | -- | 2.34 | 0.314 | -- | -- | -0.0506 | 17.6 | 17.5 | 8028 | -- | -- |
| 507.82 | 1.05 | 4.13 | 1.01 | -- | -- | -- | -- | 0.00519 | -- | -- | -- | -- | -- |
| 249.78 | 0.739 | 4.19 | -- | 2.34 | -- | -- | -- | -0.0589 | 17.6 | -- | -- | -- | -- |
| 460.44 | 1 | 4.16 | -- | -- | -0.993 | -- | -- | -0.136 | -- | 28.6 | 2006 | -- | -- |
| 534.75 | 1.08 | 4.16 | -- | -- | -- | -- | -- | -0.107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 186.22 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 10 | 187.15 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 23 | 6 |
| 15 | 187.38 | radiation | 30.0 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 21 | 187.66 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 20 | 9 |
| 28 | 188.09 | radiation | 30.0 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 42 | 188.45 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 49 | 188.54 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 3 |
| 58 | 188.86 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 59 | 188.89 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 90 | 189.90 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 24 | 22 |
| 103 | 190.19 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 2 | 3 |
| 111 | 190.26 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 2 | 19 |
| 114 | 190.29 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 15 | 20 |
| 116 | 190.31 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 15 | 18 |
| 122 | 190.39 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 6 | 21 |
| 128 | 190.43 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 12 |
| 129 | 190.43 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 4 | 15 |
| 132 | 190.46 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 4 | 17 |
| 139 | 190.51 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 148 | 190.62 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 10 |
| 149 | 190.63 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 161 | 190.68 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 166 | 190.69 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 3 | 17 |
| 173 | 190.72 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 183 | 190.72 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 225 | 190.82 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 234 | 190.84 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 246 | 190.89 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 253 | 190.91 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 2 | 21 |
| 259 | 190.93 | temperature | 25.0 | 720 | < th | dose dependent | sin | 1 | NA |
| 263 | 190.94 | temperature | 20.0 | 720 | > th | dose dependent | no | NA | NA |
| 279 | 190.99 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 302 | 191.08 | temperature | 10.0 | 720 | > th | dose dependent | sin | 0 | NA |
| 309 | 191.09 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 345 | 191.15 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 413 | 191.33 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 414 | 191.34 | temperature | 30.0 | 720 | < th | dose dependent | no | NA | NA |
| 431 | 191.41 | wind | 1.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 434 | 191.42 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 458 | 191.46 | wind | 1.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 497 | 191.53 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 550 | 191.66 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 4 | 14 |
| 554 | 191.67 | radiation | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 556 | 191.68 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 563 | 191.69 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 7 |
| 593 | 191.76 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 3 | 4 |
| 596 | 191.77 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 628 | 191.81 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 652 | 191.82 | temperature | 25.0 | 720 | < th | dose independent | rect. | 2 | 21 |
| 680 | 191.87 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 685 | 191.88 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 7 | 4 |
| 697 | 191.90 | radiation | 20.0 | 30 | < th | dose independent | rect. | 7 | 16 |
| 711 | 191.92 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 730 | 191.96 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 12 | 9 |
| 736 | 191.99 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 737 | 191.99 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 784 | 192.08 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 788 | 192.08 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 812 | 192.12 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 878 | 192.21 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 906 | 192.25 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 910 | 192.25 | temperature | 25.0 | 720 | < th | dose independent | rect. | 3 | 18 |
| 943 | 192.29 | temperature | 25.0 | 720 | > th | dose independent | rect. | 9 | 14 |
| 958 | 192.31 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 7 |
| 964 | 192.32 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 3 | 5 |
| 979 | 192.34 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 13 | 8 |
| 984 | 192.34 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 987 | 192.35 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 6 | 2 |