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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0248600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.26 (0.0547) R2 : 0.297
β1 : 0.268 (0.2) R2dD : 0.00325 R2D : -0.022
β2 : 0.367 (0.125) R2dC : 0.0134 R2C : 0.00402
β3 : 0.368 (0.18) R2dE : 0.00779 R2E : 0.0248
β4 : -2.51 (0.491) R2dD*C : 0.0406 R2D*C : 0.048
β5 : 8.23 (0.809) R2dD*E : 0.211 R2D*E : 0.228
γ1 : 0.275 (0.114) R2dN8 : 0.013 R2N8 : 0.00967
σ : 0.969
deviance : 425.48
__
_____
C
peak time of C : 13.9
E
wheather : radiation
threshold : 30.14
memory length : 4364
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15
open length of G : 17.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
425.48 0.969 4.26 0.268 0.367 0.368 -2.51 8.23 0.275 13.9 30.14 4364 15 17.2
486.63 1.03 4.15 -0.483 0.301 1.27 -1.9 -- 0.142 13.8 20.33 11605 15.7 19.3
443.13 0.98 4.25 0.227 0.344 0.301 -- 8.49 0.285 12.9 30.08 3974 15 17.2
500.15 1.04 4.16 -0.563 0.297 1.26 -- -- 0.151 13.5 20.37 11571 16.1 21.4
449.84 0.988 4.25 0.145 -- 0.125 -- 9.16 0.284 -- 30.14 3970 15 17.2
548.05 1.1 4.1 -0.426 0.286 -- -2.77 -- 0.397 13.8 -- -- -- --
577.11 1.12 4.11 -0.515 0.303 -- -- -- 0.379 12.2 -- -- -- --
505.67 1.05 4.15 -0.713 -- 1.31 -- -- 0.127 -- 20.34 11749 16.2 21.6
510.02 1.05 4.16 -- 0.306 1.25 -- -- 0.151 12.7 20.64 11538 16.1 21.7
582.88 1.13 4.11 -0.525 -- -- -- -- 0.374 -- -- -- -- --
584.1 1.13 4.09 -- 0.31 -- -- -- 0.436 12.3 -- -- -- --
516.34 1.06 4.19 -- -- 1.36 -- -- 0.0908 -- 20.7 11825 16.1 21.8
590.14 1.13 4.1 -- -- -- -- -- 0.432 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 429.15 wind 1.0 43200 < th dose dependent rect. 1 4
2 429.28 temperature 25.0 14400 > th dose dependent rect. 14 1
3 429.68 radiation 30.0 4320 > th dose independent rect. 15 17
4 430.09 radiation 1.0 4320 < th dose dependent rect. 18 11
6 430.22 temperature 25.0 14400 > th dose dependent rect. 13 11
9 430.29 temperature 25.0 14400 > th dose dependent rect. 13 9
22 430.52 wind 3.0 43200 > th dose independent rect. 8 1
43 430.78 radiation 1.0 4320 < th dose dependent rect. 18 6
66 431.09 temperature 25.0 14400 > th dose dependent sin 17 NA
156 432.08 precipitation 0.1 43200 > th dose dependent rect. 2 18
159 432.10 wind 3.0 43200 < th dose independent rect. 8 1
164 432.11 radiation 40.0 4320 < th dose independent rect. 14 9
186 432.17 temperature 25.0 14400 > th dose dependent rect. 20 23
188 432.18 temperature 20.0 14400 > th dose dependent rect. 10 1
195 432.21 temperature 30.0 14400 < th dose independent rect. 13 3
205 432.23 radiation 40.0 4320 < th dose independent rect. 14 7
217 432.26 temperature 25.0 14400 > th dose dependent rect. 23 23
219 432.28 temperature 25.0 14400 > th dose dependent no NA NA
267 432.47 radiation 40.0 4320 < th dose independent rect. 14 12
291 432.57 radiation 40.0 4320 < th dose independent rect. 14 14
314 432.68 radiation 40.0 4320 < th dose independent rect. 14 16
323 432.76 radiation 40.0 4320 < th dose independent rect. 14 2
343 432.89 temperature 30.0 14400 > th dose independent rect. 14 2
366 433.00 temperature 20.0 14400 > th dose dependent rect. 6 5
382 433.09 temperature 20.0 14400 > th dose dependent sin 3 NA
624 433.89 temperature 25.0 14400 > th dose independent rect. 15 11
683 434.12 wind 1.0 43200 > th dose independent rect. 23 6
727 434.27 temperature 20.0 14400 > th dose dependent rect. 23 1
765 434.44 temperature 30.0 14400 < th dose independent rect. 13 20
773 434.46 temperature 25.0 14400 < th dose independent rect. 15 11
778 434.48 temperature 25.0 14400 > th dose independent rect. 14 17
800 434.55 radiation 30.0 4320 > th dose independent rect. 15 2
828 434.58 temperature 25.0 14400 > th dose independent sin 15 NA
834 434.59 temperature 30.0 14400 < th dose dependent rect. 6 2
916 434.87 temperature 25.0 14400 < th dose independent rect. 14 17
919 434.88 temperature 25.0 14400 > th dose independent rect. 15 20
965 434.96 temperature 15.0 14400 > th dose dependent rect. 20 1
1000 435.02 wind 3.0 43200 < th dose dependent rect. 3 1