Os06g0248500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : U box domain containing protein.
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Os06g0248500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : U box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 175.81 | 0.623 | 10.5 | 0.506 | 1.31 | -0.948 | -1.33 | 0.411 | -0.115 | 15 | 9.48 | 4326 | -- | -- |
| 176.04 | 0.618 | 10.5 | 0.501 | 1.31 | -0.957 | -1.32 | -- | -0.114 | 15 | 9.48 | 4325 | -- | -- |
| 181.55 | 0.628 | 10.5 | 0.487 | 1.3 | -0.96 | -- | 0.469 | -0.114 | 15.2 | 9.478 | 4356 | -- | -- |
| 181.8 | 0.628 | 10.5 | 0.498 | 1.3 | -0.98 | -- | -- | -0.113 | 15.2 | 9.47 | 4351 | -- | -- |
| 225.11 | 0.699 | 10.4 | 0.474 | -- | -1.46 | -- | 0.628 | 0.0238 | -- | 3.64 | 3330 | -- | -- |
| 189.16 | 0.645 | 10.5 | 0.205 | 1.3 | -- | -1.37 | -- | -0.0294 | 15 | -- | -- | -- | -- |
| 195.33 | 0.654 | 10.5 | 0.175 | 1.3 | -- | -- | -- | -0.0371 | 15.1 | -- | -- | -- | -- |
| 219.94 | 0.691 | 10.4 | 0.3 | -- | -1.94 | -- | -- | -0.115 | -- | 3.605 | 3362 | -- | -- |
| 183.53 | 0.631 | 10.5 | -- | 1.25 | -0.722 | -- | -- | -0.109 | 15 | 16.98 | 3167 | -- | -- |
| 291.67 | 0.798 | 10.5 | 0.119 | -- | -- | -- | -- | -0.071 | -- | -- | -- | -- | -- |
| 196.14 | 0.655 | 10.5 | -- | 1.3 | -- | -- | -- | -0.0565 | 15.1 | -- | -- | -- | -- |
| 215 | 0.683 | 10.5 | -- | -- | -1.69 | -- | -- | -0.11 | -- | 2.27 | 3343 | -- | -- |
| 292.05 | 0.798 | 10.5 | -- | -- | -- | -- | -- | -0.0843 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 165.43 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 2 | 166.00 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 4 | 166.20 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 5 |
| 11 | 166.97 | wind | 1.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 15 | 167.20 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 16 | 167.21 | temperature | 20.0 | 720 | < th | dose independent | rect. | 4 | 1 |
| 17 | 167.28 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 21 | 167.47 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 10 |
| 23 | 167.48 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 2 |
| 26 | 167.58 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 7 |
| 28 | 167.64 | wind | 1.0 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 31 | 167.79 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 32 | 167.82 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 7 |
| 36 | 167.97 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 6 | 6 |
| 39 | 168.03 | wind | 1.0 | 43200 | < th | dose independent | rect. | 23 | 9 |
| 42 | 168.06 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 68 | 168.65 | wind | 9.0 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 86 | 168.87 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 107 | 169.13 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 7 |
| 146 | 169.44 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 2 |
| 156 | 169.52 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 157 | 169.52 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 160 | 169.54 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 163 | 169.56 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 6 |
| 185 | 169.76 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 1 | 4 |
| 188 | 169.78 | wind | 9.0 | 14400 | < th | dose independent | rect. | 8 | 3 |
| 200 | 169.89 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 201 | 169.89 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 202 | 169.89 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 203 | 169.89 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 218 | 170.08 | wind | 1.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 221 | 170.11 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 246 | 170.27 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 261 | 170.32 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 270 | 170.37 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 278 | 170.41 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 307 | 170.56 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 4 |
| 339 | 170.74 | wind | 1.0 | 43200 | > th | dose independent | sin | 9 | NA |
| 349 | 170.79 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 4 | 5 |
| 356 | 170.82 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 3 | 5 |
| 386 | 170.99 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 391 | 171.02 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 413 | 171.13 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 19 | 14 |
| 420 | 171.16 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 427 | 171.22 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 22 | 11 |
| 428 | 171.22 | radiation | 40.0 | 4320 | < th | dose independent | rect. | 17 | 16 |
| 432 | 171.24 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 464 | 171.41 | wind | 5.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 525 | 171.70 | wind | 5.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 543 | 171.81 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 7 | 2 |
| 556 | 171.88 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 7 |
| 568 | 171.95 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 12 |
| 581 | 172.00 | temperature | 25.0 | 30 | > th | dose independent | rect. | 4 | 16 |
| 601 | 172.09 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 11 | 5 |
| 616 | 172.13 | wind | 1.0 | 43200 | < th | dose dependent | sin | 6 | NA |
| 648 | 172.24 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 7 |
| 651 | 172.24 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 7 |
| 652 | 172.24 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 12 |
| 656 | 172.26 | temperature | 25.0 | 90 | < th | dose independent | rect. | 7 | 10 |
| 661 | 172.28 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 664 | 172.28 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 12 |
| 673 | 172.30 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 1 | 12 |
| 677 | 172.33 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 679 | 172.33 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 681 | 172.34 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 4 |
| 684 | 172.34 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 4 |
| 719 | 172.48 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 4 |
| 720 | 172.48 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 9 |
| 729 | 172.50 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 732 | 172.51 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 9 |
| 744 | 172.54 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 746 | 172.54 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 762 | 172.61 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 7 |
| 783 | 172.71 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 788 | 172.72 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 9 |
| 790 | 172.72 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 9 |
| 797 | 172.74 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 7 | 5 |
| 800 | 172.74 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 14 |
| 824 | 172.80 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 827 | 172.80 | temperature | 25.0 | 90 | > th | dose independent | rect. | 8 | 12 |
| 863 | 172.90 | wind | 5.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 897 | 172.99 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 12 |
| 923 | 173.06 | wind | 7.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 929 | 173.08 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 14 |
| 947 | 173.12 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 983 | 173.20 | wind | 9.0 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 985 | 173.20 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 5 |