FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0247500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pyrophosphate-fructose 6-phosphate 1-phosphotransferase (EC 2.7.1.90) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.1 (0.0202) R2 : 0.271
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.672 (0.0516) R2dC : 0.273 R2C : 0.271
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00773 (0.0424) R2dN8 : 6.85e-05 R2N8 : -0.00187
σ : 0.38
deviance : 66.16
__
_____
C
peak time of C : 20
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
57.91 0.358 11.4 -2.02 0.672 -52.6 0.999 -108 -0.0744 19.8 15.08 4942 -- --
61.22 0.367 12.1 -0.168 0.68 -0.833 0.935 -- -0.0189 19.9 15.08 4942 -- --
60.7 0.363 11.4 -2.06 0.673 -52.1 -- -107 -0.0755 20 15.09 4860 -- --
61.46 0.365 12.1 -0.363 0.697 -0.793 -- -- -0.05 19.8 16.7 6153 -- --
85.24 0.43 11.4 -2.09 -- -51.9 -- -106 -0.0903 -- 15.11 4970 -- --
62.55 0.371 12.1 -0.135 0.672 -- 1.01 -- -0.0108 19.8 -- -- -- --
65.47 0.379 12.1 -0.162 0.671 -- -- -- -0.0103 20 -- -- -- --
85.59 0.431 12.1 -0.408 -- -0.875 -- -- -0.0856 -- 16.6 6336 -- --
64.22 0.373 12.1 -- 0.666 -0.576 -- -- -0.00654 19.9 15.62 6102 -- --
90.02 0.443 12.1 -0.169 -- -- -- -- -0.019 -- -- -- -- --
66.16 0.38 12.1 -- 0.672 -- -- -- 0.00773 20 -- -- -- --
88.71 0.439 12.1 -- -- -0.597 -- -- -0.0141 -- 15.49 6258 -- --
90.77 0.445 12.1 -- -- -- -- -- -0.000215 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 52.15 humidity 80.0 10 > th dose independent rect. 19 2
2 52.16 humidity 80.0 90 > th dose independent rect. 19 1
6 52.35 humidity 70.0 30 > th dose dependent rect. 19 2
9 52.42 radiation 20.0 4320 < th dose independent rect. 20 10
11 52.50 atmosphere 1005.0 720 < th dose independent rect. 20 1
20 52.88 atmosphere 1005.0 720 < th dose independent rect. 20 3
31 53.16 radiation 1.0 1440 < th dose independent rect. 9 6
32 53.16 radiation 1.0 1440 < th dose dependent rect. 9 6
40 53.25 radiation 1.0 1440 < th dose independent rect. 13 2
41 53.25 radiation 1.0 1440 < th dose dependent rect. 13 2
65 53.53 radiation 1.0 1440 > th dose independent rect. 8 7
69 53.58 radiation 1.0 1440 > th dose independent rect. 13 2
70 53.59 temperature 15.0 90 > th dose independent rect. 21 22
74 53.69 humidity 60.0 30 > th dose dependent rect. 19 11
104 54.00 radiation 1.0 1440 < th dose independent rect. 11 1
105 54.00 radiation 1.0 1440 < th dose dependent rect. 11 1
126 54.34 wind 5.0 90 < th dose dependent rect. 18 1
129 54.36 humidity 70.0 10 > th dose independent rect. 19 11
137 54.55 atmosphere 1010.0 30 < th dose dependent rect. 20 10
138 54.56 humidity 50.0 14400 > th dose independent rect. 18 2
147 54.66 precipitation 0.1 270 > th dose independent rect. 2 2
148 54.66 precipitation 0.1 270 > th dose dependent rect. 2 2
155 54.70 temperature 10.0 1440 > th dose independent rect. 20 11
158 54.70 temperature 30.0 1440 < th dose independent rect. 20 11
162 54.70 humidity 50.0 1440 > th dose independent rect. 20 11
167 54.70 atmosphere 995.0 1440 > th dose independent rect. 20 11
172 54.70 temperature 10.0 1440 > th dose independent rect. 7 13
198 54.92 temperature 20.0 90 > th dose independent rect. 20 10
204 54.97 radiation 30.0 14400 < th dose independent rect. 17 3
206 54.97 radiation 10.0 14400 < th dose dependent rect. 20 2
209 54.99 humidity 60.0 30 > th dose dependent rect. 19 16
227 55.12 atmosphere 1005.0 270 < th dose dependent rect. 1 1
230 55.13 temperature 25.0 90 < th dose independent rect. 19 2
231 55.13 atmosphere 1005.0 10 < th dose dependent rect. 24 6
241 55.21 temperature 10.0 1440 > th dose independent rect. 20 2
244 55.21 temperature 30.0 1440 < th dose independent rect. 20 2
248 55.21 humidity 50.0 1440 > th dose independent rect. 20 2
254 55.21 atmosphere 995.0 1440 > th dose independent rect. 20 2
256 55.21 radiation 1.0 1440 < th dose independent rect. 20 2
277 55.21 temperature 10.0 1440 > th dose independent rect. 22 22
283 55.22 radiation 40.0 1440 < th dose dependent rect. 20 2
286 55.23 radiation 20.0 1440 < th dose dependent rect. 20 2
325 55.36 humidity 90.0 720 > th dose dependent rect. 20 1
326 55.36 atmosphere 1005.0 270 < th dose dependent rect. 23 4
332 55.39 wind 5.0 90 < th dose independent rect. 19 2
346 55.44 atmosphere 1005.0 90 < th dose dependent rect. 23 8
352 55.46 radiation 10.0 14400 < th dose dependent rect. 20 4
364 55.52 temperature 30.0 90 < th dose dependent rect. 19 2
469 55.73 radiation 40.0 30 < th dose dependent rect. 6 13
472 55.74 radiation 20.0 30 < th dose dependent rect. 19 11
479 55.77 humidity 60.0 14400 > th dose independent rect. 24 8
489 55.81 humidity 90.0 14400 < th dose independent rect. 6 1
493 55.82 wind 9.0 90 < th dose independent rect. 21 22
505 55.86 humidity 90.0 14400 > th dose independent rect. 6 1
511 55.88 temperature 20.0 270 > th dose independent sin 9 NA
520 55.90 humidity 80.0 14400 > th dose dependent rect. 6 1
530 55.92 temperature 20.0 90 > th dose independent rect. 19 1
552 55.97 wind 9.0 90 < th dose independent rect. 19 23
557 55.99 temperature 15.0 1440 > th dose independent rect. 18 2
570 56.02 atmosphere 1005.0 30 < th dose dependent sin 10 NA
589 56.04 radiation 1.0 270 < th dose dependent rect. 6 14
610 56.08 temperature 10.0 43200 > th dose independent rect. 16 4
616 56.08 radiation 40.0 90 < th dose dependent rect. 21 22
655 56.11 humidity 70.0 14400 < th dose dependent rect. 21 1
667 56.12 temperature 10.0 43200 > th dose independent rect. 18 2
668 56.12 radiation 10.0 30 < th dose independent rect. 19 11
689 56.16 temperature 30.0 30 < th dose independent rect. 19 11
690 56.16 humidity 50.0 30 > th dose independent rect. 19 11
692 56.16 atmosphere 995.0 30 > th dose independent rect. 19 11
696 56.16 temperature 10.0 30 > th dose independent rect. 6 13
698 56.16 atmosphere 1015.0 30 < th dose independent rect. 6 13
706 56.17 radiation 30.0 30 < th dose dependent rect. 10 9
712 56.19 wind 9.0 30 < th dose independent rect. 19 11
740 56.24 wind 7.0 4320 > th dose independent rect. 17 1
750 56.25 temperature 15.0 720 > th dose independent rect. 8 23
755 56.26 temperature 10.0 90 > th dose independent rect. 19 2
759 56.26 humidity 50.0 90 > th dose independent rect. 19 2
761 56.26 atmosphere 995.0 90 > th dose independent rect. 19 2
762 56.26 atmosphere 1010.0 90 < th dose independent rect. 19 2
764 56.26 radiation 1.0 90 < th dose independent rect. 19 2
770 56.26 precipitation 0.1 30 < th dose independent rect. 6 13
775 56.26 radiation 1.0 90 < th dose dependent rect. 19 2
782 56.26 precipitation 0.1 30 < th dose dependent rect. 6 13
785 56.27 temperature 20.0 10 > th dose independent rect. 1 5
791 56.28 wind 9.0 43200 < th dose independent rect. 19 1
792 56.28 radiation 1.0 1440 > th dose independent rect. 9 1
796 56.28 temperature 30.0 1440 < th dose independent rect. 20 4
800 56.28 humidity 50.0 1440 > th dose independent rect. 20 4
806 56.28 atmosphere 995.0 1440 > th dose independent rect. 20 4
807 56.28 radiation 1.0 1440 < th dose independent rect. 20 4
827 56.28 temperature 10.0 1440 > th dose independent rect. 24 20
838 56.29 radiation 30.0 1440 < th dose dependent rect. 20 4
852 56.31 humidity 90.0 14400 < th dose independent rect. 4 4
853 56.31 radiation 1.0 4320 < th dose independent rect. 24 5
856 56.31 atmosphere 1015.0 10 < th dose dependent rect. 20 21
865 56.32 radiation 40.0 30 < th dose dependent rect. 23 20
866 56.33 temperature 20.0 270 > th dose independent rect. 1 1
880 56.34 wind 1.0 90 > th dose independent rect. 5 14
920 56.40 radiation 10.0 4320 < th dose dependent rect. 24 5
924 56.41 atmosphere 1005.0 1440 > th dose independent rect. 20 1
925 56.41 wind 1.0 90 > th dose independent rect. 19 2
926 56.41 wind 9.0 1440 < th dose independent rect. 18 2
931 56.41 radiation 10.0 30 < th dose dependent rect. 13 6
936 56.42 humidity 70.0 14400 > th dose independent rect. 21 8
942 56.43 humidity 60.0 14400 > th dose independent rect. 7 1
945 56.43 humidity 80.0 43200 > th dose independent rect. 22 20
953 56.44 humidity 80.0 43200 > th dose independent rect. 23 18
956 56.45 wind 9.0 30 < th dose independent rect. 6 13
996 56.50 humidity 80.0 43200 > th dose independent rect. 21 22
997 56.50 atmosphere 995.0 90 > th dose dependent rect. 19 2