Os06g0247000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Avr9/Cf-9 rapidly elicited protein 231.
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Os06g0247000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Avr9/Cf-9 rapidly elicited protein 231.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 238.65 | 0.726 | 9.31 | -2.11 | 2.22 | 2.17 | -0.363 | 1.01 | -1.29 | 10.9 | 70.66 | 1135 | 10.9 | -- |
| 240.2 | 0.722 | 9.32 | -2.2 | 2.27 | 2.22 | -0.565 | -- | -1.3 | 10.9 | 71 | 1118 | 11.1 | -- |
| 238.85 | 0.72 | 9.31 | -2.11 | 2.26 | 2.17 | -- | 1.2 | -1.29 | 10.9 | 70.62 | 1122 | 11 | -- |
| 241.57 | 0.724 | 9.33 | -2.27 | 2.28 | 2.25 | -- | -- | -1.33 | 10.9 | 71 | 1122 | 11.3 | -- |
| 437.72 | 0.974 | 9.38 | -1.9 | -- | 1.88 | -- | 1.44 | -1.35 | -- | 72 | 1445 | 10.9 | -- |
| 417.09 | 0.957 | 9.29 | -1.95 | 1.67 | -- | -0.835 | -- | -1.12 | 9.9 | -- | -- | -- | -- |
| 419.78 | 0.959 | 9.29 | -1.98 | 1.68 | -- | -- | -- | -1.12 | 9.87 | -- | -- | -- | -- |
| 435.73 | 0.972 | 9.37 | -2.11 | -- | 1.89 | -- | -- | -1.37 | -- | 71 | 1428 | 8.37 | -- |
| 371.28 | 0.897 | 9.3 | -- | 2.14 | 2.01 | -- | -- | -1.07 | 11.1 | 71.86 | 1111 | 9.81 | -- |
| 588.25 | 1.13 | 9.33 | -2 | -- | -- | -- | -- | -1.12 | -- | -- | -- | -- | -- |
| 523.17 | 1.07 | 9.24 | -- | 1.68 | -- | -- | -- | -0.9 | 9.96 | -- | -- | -- | -- |
| 523.17 | 1.07 | 9.28 | -- | -- | 1.68 | -- | -- | -0.9 | -- | 106.6 | 1420 | 7.87 | -- |
| 693.64 | 1.23 | 9.28 | -- | -- | -- | -- | -- | -0.899 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 269.77 | temperature | 30 | 1440 | > th | dose dependent | rect. | 14 | 2 |
| 7 | 271.56 | humidity | 80 | 1440 | < th | dose dependent | sin | 16 | NA |
| 9 | 271.62 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 8 |
| 25 | 271.83 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 19 |
| 28 | 271.94 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 44 | 272.12 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 56 | 272.41 | temperature | 30 | 1440 | > th | dose dependent | sin | 17 | NA |
| 183 | 273.70 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 296 | 273.97 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 382 | 276.04 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 15 |
| 386 | 276.07 | humidity | 70 | 1440 | < th | dose independent | sin | 15 | NA |
| 410 | 276.37 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 435 | 276.52 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 438 | 276.56 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 17 |
| 450 | 276.64 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 13 |
| 456 | 276.68 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 11 |
| 490 | 276.82 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 518 | 277.45 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 538 | 277.62 | humidity | 60 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 575 | 278.00 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 594 | 278.20 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 614 | 278.39 | temperature | 30 | 1440 | > th | dose independent | sin | 14 | NA |
| 660 | 278.74 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 662 | 278.77 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 669 | 278.83 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 674 | 278.84 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 675 | 278.85 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 680 | 278.88 | temperature | 30 | 1440 | < th | dose independent | sin | 15 | NA |
| 706 | 279.07 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 707 | 279.08 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 14 |
| 708 | 279.09 | humidity | 70 | 1440 | > th | dose independent | sin | 15 | NA |
| 718 | 279.20 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 9 |
| 726 | 279.25 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 747 | 279.35 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 787 | 279.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 811 | 279.81 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 902 | 280.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 21 |
| 905 | 280.15 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 912 | 280.15 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 22 |
| 921 | 280.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 933 | 280.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 23 |