Os06g0246600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glutamate receptor 3.3 precursor (Ligand-gated ion channel 3.3).
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Os06g0246600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glutamate receptor 3.3 precursor (Ligand-gated ion channel 3.3).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 147.33 | 0.57 | 2.99 | -0.0592 | 0.297 | -0.281 | -0.715 | 0.72 | 0.0636 | 10.3 | 10.07 | 15 | -- | -- |
| 148.58 | 0.568 | 2.99 | -0.0891 | 0.302 | -0.293 | -0.0546 | -- | 0.0619 | 10.3 | 10.45 | 15 | -- | -- |
| 148.26 | 0.571 | 2.99 | -0.0804 | 0.269 | -0.235 | -- | 0.278 | 0.0455 | 9.44 | 10.07 | 15 | -- | -- |
| 148.5 | 0.568 | 2.99 | -0.0794 | 0.31 | -0.275 | -- | -- | 0.0545 | 9.85 | 10.45 | 15 | -- | -- |
| 150.86 | 0.575 | 3 | -0.0936 | -- | -0.107 | -- | 0.283 | 0.0492 | -- | 10.2 | 15 | -- | -- |
| 150.69 | 0.575 | 3 | -0.101 | 0.179 | -- | 0.088 | -- | 0.0468 | 5.53 | -- | -- | -- | -- |
| 150.71 | 0.575 | 3 | -0.1 | 0.179 | -- | -- | -- | 0.0465 | 5.61 | -- | -- | -- | -- |
| 151.29 | 0.573 | 3 | -0.0895 | -- | -0.106 | -- | -- | 0.0504 | -- | 10.45 | 15 | -- | -- |
| 148.62 | 0.568 | 2.99 | -- | 0.315 | -0.281 | -- | -- | 0.0608 | 9.99 | 10.17 | 15 | -- | -- |
| 152.38 | 0.577 | 3 | -0.0944 | -- | -- | -- | -- | 0.0508 | -- | -- | -- | -- | -- |
| 150.97 | 0.575 | 3 | -- | 0.178 | -- | -- | -- | 0.0576 | 5.63 | -- | -- | -- | -- |
| 151.49 | 0.573 | 3 | -- | -- | -0.105 | -- | -- | 0.0618 | -- | 10.44 | 15 | -- | -- |
| 152.61 | 0.577 | 3 | -- | -- | -- | -- | -- | 0.0613 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 134.41 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 10 | 2 |
| 3 | 135.65 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 20 | 1 |
| 5 | 136.36 | radiation | 1.0 | 10 | < th | dose independent | rect. | 7 | 5 |
| 7 | 136.36 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 7 | 5 |
| 9 | 136.37 | radiation | 1.0 | 90 | < th | dose independent | rect. | 10 | 1 |
| 11 | 136.37 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 13 | 136.43 | radiation | 1.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 68 | 138.76 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 6 | 17 |
| 81 | 139.88 | humidity | 90.0 | 90 | > th | dose independent | rect. | 21 | 1 |
| 87 | 139.93 | humidity | 90.0 | 10 | > th | dose independent | rect. | 22 | 1 |
| 116 | 140.36 | radiation | 1.0 | 720 | < th | dose independent | rect. | 10 | 1 |
| 117 | 140.36 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 10 | 1 |
| 193 | 142.51 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 6 | 1 |
| 203 | 142.67 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 205 | 142.71 | atmosphere | 1005.0 | 30 | < th | dose dependent | rect. | 7 | 3 |
| 230 | 143.04 | radiation | 20.0 | 30 | < th | dose independent | rect. | 20 | 17 |
| 238 | 143.16 | humidity | 80.0 | 720 | > th | dose independent | rect. | 12 | 1 |
| 239 | 143.16 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 263 | 143.83 | radiation | 30.0 | 10 | < th | dose dependent | rect. | 20 | 17 |
| 283 | 144.06 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 20 | 16 |
| 327 | 144.50 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 20 | 1 |
| 330 | 144.50 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 20 | 15 |
| 334 | 144.55 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 7 | 3 |
| 363 | 144.78 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 364 | 144.79 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 376 | 144.88 | humidity | 90.0 | 90 | > th | dose independent | rect. | 6 | 17 |
| 416 | 145.11 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 419 | 145.13 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 427 | 145.16 | humidity | 90.0 | 30 | > th | dose dependent | sin | 20 | NA |
| 437 | 145.20 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 438 | 145.20 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 441 | 145.20 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 446 | 145.21 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 462 | 145.25 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 478 | 145.27 | humidity | 90.0 | 10 | > th | dose independent | rect. | 6 | 17 |
| 484 | 145.28 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 491 | 145.29 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 493 | 145.29 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 494 | 145.29 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 498 | 145.29 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 499 | 145.29 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 501 | 145.29 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 506 | 145.29 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 507 | 145.29 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 508 | 145.29 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 513 | 145.29 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 534 | 145.38 | radiation | 20.0 | 10 | < th | dose independent | rect. | 12 | 1 |
| 553 | 145.44 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 566 | 145.49 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 597 | 145.59 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 6 | 1 |
| 610 | 145.66 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 20 | 1 |
| 631 | 145.71 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 700 | 145.88 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 746 | 146.01 | humidity | 70.0 | 10 | > th | dose independent | rect. | 20 | 16 |
| 750 | 146.02 | humidity | 90.0 | 10 | > th | dose independent | rect. | 4 | 19 |
| 788 | 146.11 | temperature | 25.0 | 90 | < th | dose independent | rect. | 20 | 1 |
| 809 | 146.14 | humidity | 80.0 | 270 | > th | dose independent | rect. | 17 | 16 |
| 911 | 146.29 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 20 | 2 |
| 924 | 146.31 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 937 | 146.33 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 9 | 1 |
| 986 | 146.40 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 20 | 15 |
| 992 | 146.42 | humidity | 90.0 | 10 | > th | dose independent | rect. | 21 | 13 |