Os06g0245800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Alanyl-tRNA synthetase.
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Os06g0245800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Alanyl-tRNA synthetase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.98 | 0.235 | 13.4 | 0.276 | 0.22 | -0.438 | 0.377 | 0.407 | 0.00197 | 10.1 | 20.3 | 2030 | -- | -- |
| 25.22 | 0.234 | 13.4 | 0.284 | 0.242 | -0.543 | 0.349 | -- | -0.00107 | 9.83 | 19.8 | 2886 | -- | -- |
| 25.52 | 0.235 | 13.4 | 0.28 | 0.224 | -0.453 | -- | 0.388 | -0.000572 | 10.1 | 20.2 | 1921 | -- | -- |
| 25.66 | 0.236 | 13.4 | 0.279 | 0.24 | -0.551 | -- | -- | -0.000748 | 9.93 | 19.6 | 2939 | -- | -- |
| 28.3 | 0.248 | 13.4 | 0.273 | -- | -0.487 | -- | 0.24 | 0.00149 | -- | 20.2 | 2137 | -- | -- |
| 30.48 | 0.259 | 13.4 | -0.0252 | 0.241 | -- | 0.368 | -- | -0.13 | 10.1 | -- | -- | -- | -- |
| 31.02 | 0.261 | 13.4 | -0.0106 | 0.239 | -- | -- | -- | -0.129 | 10.2 | -- | -- | -- | -- |
| 28.42 | 0.248 | 13.4 | 0.249 | -- | -0.559 | -- | -- | -0.00501 | -- | 19.85 | 2153 | -- | -- |
| 26.69 | 0.241 | 13.4 | -- | 0.239 | -0.419 | -- | -- | -0.0561 | 10.1 | 20.39 | 1595 | -- | -- |
| 34.49 | 0.274 | 13.4 | -0.0139 | -- | -- | -- | -- | -0.13 | -- | -- | -- | -- | -- |
| 31.02 | 0.261 | 13.4 | -- | 0.239 | -- | -- | -- | -0.128 | 10.2 | -- | -- | -- | -- |
| 29.34 | 0.252 | 13.4 | -- | -- | -0.329 | -- | -- | -0.0335 | -- | 22.22 | 928 | -- | -- |
| 34.49 | 0.274 | 13.4 | -- | -- | -- | -- | -- | -0.128 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.11 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 20 |
| 2 | 24.27 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 8 |
| 7 | 24.44 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 18 |
| 17 | 24.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 21 | 24.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 41 | 24.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 10 |
| 42 | 24.88 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 47 | 24.90 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 7 |
| 48 | 24.90 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 7 |
| 61 | 24.92 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 87 | 24.98 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 90 | 24.99 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 103 | 25.01 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 123 | 25.03 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 146 | 25.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 16 |
| 168 | 25.08 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 17 |
| 171 | 25.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 6 |
| 189 | 25.10 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 192 | 25.10 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 17 |
| 196 | 25.10 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 228 | 25.12 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 234 | 25.12 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 3 |
| 241 | 25.13 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 254 | 25.13 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 21 |
| 310 | 25.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 313 | 25.16 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 319 | 25.16 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 366 | 25.18 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 8 |
| 462 | 25.22 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 463 | 25.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 479 | 25.23 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 549 | 25.25 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 619 | 25.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 646 | 25.28 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 678 | 25.29 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 688 | 25.29 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 774 | 25.32 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 798 | 25.33 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 839 | 25.34 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 7 |
| 847 | 25.34 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 5 | 14 |
| 877 | 25.35 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 885 | 25.35 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 9 | 10 |
| 891 | 25.35 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 6 | 13 |
| 918 | 25.36 | atmosphere | 995 | 43200 | < th | dose independent | sin | 23 | NA |
| 920 | 25.36 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 10 | 8 |