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Os06g0244000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SAM dependent carboxyl methyltransferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.11 (0.0605) R2 : 0.519
β1 : -0.907 (0.225) R2dD : 0.0185 R2D : 0.026
β2 : 2.35 (0.158) R2dC : 0.236 R2C : 0.249
β3 : -3.55 (0.274) R2dE : 0.187 R2E : 0.187
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.818 (0.13) R2dN8 : 0.057 R2N8 : 0.0392
σ : 1.13
deviance : 587.03
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C
peak time of C : 5.94
E
wheather : radiation
threshold : 0.6124
memory length : 1451
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.2
open length of G : 9.78

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
585.65 1.14 8.11 -0.895 2.4 -3.19 1.14 -0.194 0.766 6.35 0.5249 1449 18.2 9.88
584.26 1.13 8.11 -0.917 2.38 -3.31 1.15 -- 0.803 6.2 0.53 1449 18.2 9.79
586.66 1.13 8.11 -0.798 2.35 -3.57 -- -0.943 0.828 6.04 0.6142 1450 18.2 9.79
587.03 1.13 8.11 -0.907 2.35 -3.55 -- -- 0.818 5.94 0.6124 1451 18.2 9.78
844.66 1.35 8.09 -0.715 -- -4.2 -- -0.281 1.05 -- 0.8601 1454 18.2 9.38
750.51 1.28 8.13 -1.44 2.64 -- 1.11 -- 0.584 7.23 -- -- -- --
753.8 1.29 8.13 -1.42 2.64 -- -- -- 0.582 7.25 -- -- -- --
844.49 1.35 8.11 -0.832 -- -4.19 -- -- 0.976 -- 0.8048 1455 18.2 9.35
607.92 1.15 8.11 -- 2.34 -3.64 -- -- 0.875 5.92 0.5676 1451 18.2 9.8
1122.37 1.57 8.19 -1.37 -- -- -- -- 0.627 -- -- -- -- --
806.74 1.33 8.1 -- 2.62 -- -- -- 0.74 7.29 -- -- -- --
861.57 1.37 8.08 -- -- -4.37 -- -- 1.1 -- 0.81 1454 18.2 9.27
1171.92 1.6 8.16 -- -- -- -- -- 0.779 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 545.80 wind 5 43200 > th dose independent rect. 14 1
2 547.00 wind 5 43200 < th dose independent rect. 14 1
13 557.23 wind 3 43200 > th dose dependent rect. 14 1
33 564.19 wind 9 43200 < th dose dependent rect. 13 2
34 564.30 wind 5 43200 < th dose independent rect. 13 8
35 564.40 wind 5 43200 > th dose independent rect. 13 8
92 571.02 radiation 40 43200 > th dose independent rect. 9 1
129 574.90 wind 3 43200 > th dose dependent rect. 13 8
132 575.04 radiation 20 43200 > th dose independent rect. 7 3
187 576.74 wind 1 43200 < th dose dependent rect. 24 1
209 577.44 radiation 20 43200 > th dose dependent rect. 9 1
213 577.90 wind 5 43200 < th dose independent sin 19 NA
232 578.97 radiation 30 43200 < th dose independent rect. 9 1
324 580.94 radiation 20 43200 > th dose independent sin 10 NA
327 581.04 wind 5 43200 > th dose independent sin 18 NA
330 581.14 radiation 30 43200 < th dose dependent rect. 8 1
346 581.27 humidity 80 43200 < th dose independent rect. 21 1
352 581.58 humidity 60 43200 > th dose independent rect. 11 1
370 582.16 humidity 80 43200 > th dose independent rect. 21 1
386 582.74 wind 3 43200 > th dose dependent sin 19 NA
450 583.62 radiation 40 43200 > th dose independent sin 10 NA
504 585.00 wind 9 43200 < th dose dependent rect. 11 11
562 586.07 wind 9 43200 < th dose dependent rect. 9 12
608 586.78 humidity 80 43200 < th dose independent rect. 20 3
639 587.48 radiation 10 43200 > th dose dependent sin 9 NA
725 588.64 humidity 80 43200 < th dose dependent rect. 20 3
748 588.71 radiation 20 43200 < th dose independent rect. 18 17
753 588.74 radiation 20 43200 < th dose independent rect. 22 13
839 589.12 radiation 40 43200 < th dose dependent rect. 19 16
842 589.14 radiation 40 43200 < th dose dependent rect. 21 14
905 589.61 humidity 70 43200 < th dose dependent rect. 11 1
913 589.81 wind 9 43200 < th dose dependent sin 20 NA
915 589.82 humidity 80 43200 < th dose dependent rect. 20 16
952 589.91 wind 9 43200 > th dose dependent rect. 18 3
996 590.17 humidity 80 43200 > th dose independent rect. 20 4