Os06g0243100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os06g0243100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 416.86 | 0.959 | 5.86 | -0.946 | 4.18 | 4.67 | -0.08 | 2.77 | -1.18 | 7.55 | 0.45 | 4393 | 6.05 | -- |
| 427.63 | 0.963 | 5.92 | -1.51 | 4.25 | 4.49 | 0.196 | -- | -1.24 | 7.46 | 0.4594 | 4411 | 6.2 | -- |
| 415.99 | 0.95 | 5.86 | -0.898 | 4.12 | 4.58 | -- | 2.86 | -1.15 | 7.57 | 0.4498 | 4386 | 5.66 | -- |
| 424.18 | 0.959 | 5.92 | -1.64 | 4.16 | 4.47 | -- | -- | -1.29 | 7.5 | 0.4404 | 4407 | 5.8 | -- |
| 962.88 | 1.45 | 5.94 | -0.825 | -- | 4.65 | -- | 2.93 | -1.07 | -- | -10.98 | 5193 | 5.73 | -- |
| 885.43 | 1.39 | 5.7 | -0.721 | 4.24 | -- | -0.164 | -- | -0.36 | 7.51 | -- | -- | -- | -- |
| 885.51 | 1.39 | 5.7 | -0.725 | 4.24 | -- | -- | -- | -0.36 | 7.51 | -- | -- | -- | -- |
| 885.51 | 1.39 | 5.81 | -0.724 | -- | 4.22 | -- | -- | -0.36 | -- | -10.61 | 5190 | 5.74 | -- |
| 493.66 | 1.03 | 5.92 | -- | 4.22 | 4.19 | -- | -- | -1.11 | 7.5 | 0.44 | 4413 | 6.16 | -- |
| 1847.9 | 2.01 | 5.8 | -0.661 | -- | -- | -- | -- | -0.294 | -- | -- | -- | -- | -- |
| 899.36 | 1.4 | 5.68 | -- | 4.24 | -- | -- | -- | -0.279 | 7.52 | -- | -- | -- | -- |
| 899.36 | 1.4 | 5.8 | -- | -- | 4.22 | -- | -- | -0.279 | -- | -10.73 | 5196 | 5.78 | -- |
| 1859.43 | 2.01 | 5.78 | -- | -- | -- | -- | -- | -0.22 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 416.72 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 2 | 416.97 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 11 |
| 6 | 417.10 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 12 | 417.32 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 13 | 417.54 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 17 |
| 15 | 417.63 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 4 |
| 16 | 417.67 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 24 | 418.84 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 18 |
| 29 | 419.17 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 39 | 419.17 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 44 | 419.44 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 7 |
| 46 | 419.59 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 51 | 419.77 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 52 | 419.79 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 5 |
| 68 | 420.16 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 91 | 420.90 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 113 | 421.41 | humidity | 90 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 117 | 421.78 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 20 |
| 122 | 421.83 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 123 | 421.94 | radiation | 1 | 43200 | < th | dose independent | sin | 11 | NA |
| 125 | 422.10 | radiation | 1 | 43200 | < th | dose independent | rect. | 24 | 11 |
| 153 | 422.42 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 155 | 422.48 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 157 | 422.52 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 189 | 423.11 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 241 | 424.00 | radiation | 1 | 43200 | > th | dose independent | sin | 10 | NA |
| 285 | 424.15 | radiation | 1 | 14400 | < th | dose dependent | sin | 10 | NA |
| 299 | 424.55 | humidity | 90 | 43200 | < th | dose independent | rect. | 5 | 6 |
| 327 | 425.15 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 22 |
| 335 | 425.20 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 13 |
| 377 | 425.91 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 12 |
| 401 | 426.29 | humidity | 90 | 43200 | < th | dose independent | rect. | 5 | 19 |
| 420 | 426.51 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 17 |
| 425 | 426.55 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 3 |
| 444 | 426.68 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 9 |
| 455 | 426.78 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 13 |
| 492 | 427.06 | radiation | 1 | 43200 | < th | dose independent | rect. | 24 | 19 |
| 505 | 427.09 | radiation | 1 | 43200 | < th | dose independent | no | NA | NA |
| 513 | 427.10 | radiation | 1 | 43200 | < th | dose independent | rect. | 2 | 23 |
| 525 | 427.12 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 20 |
| 541 | 427.19 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 590 | 427.61 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 608 | 427.85 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 614 | 427.90 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 19 |
| 741 | 428.77 | radiation | 1 | 43200 | > th | dose independent | no | NA | NA |
| 790 | 428.79 | humidity | 90 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 835 | 429.15 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 22 |
| 836 | 429.16 | humidity | 90 | 43200 | > th | dose dependent | sin | 2 | NA |
| 896 | 429.50 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 12 |
| 929 | 429.67 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 17 |
| 940 | 429.73 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 20 |
| 949 | 429.76 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 981 | 429.87 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 992 | 429.89 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 22 |