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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0242700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SAM dependent carboxyl methyltransferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0175) R2 : 0.0151
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0973 (0.0368) R2dN8 : 0.0195 R2N8 : 0.0151
σ : 0.329
deviance : 49.69
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
47.61 0.324 2.91 -0.106 0.0258 -0.254 -0.0958 1.29 0.0805 19 1.002 16 -- --
48.91 0.328 2.9 -0.0537 0.00773 -0.137 0.172 -- 0.0943 13.1 1.1 16 -- --
47.63 0.321 2.91 -0.104 0.0311 -0.261 -- 1.28 0.0807 17.2 1.074 16 -- --
49.03 0.328 2.9 -0.0474 0.0122 -0.137 -- -- 0.0954 16.4 1.074 16 -- --
47.67 0.322 2.91 -0.102 -- -0.243 -- 1.26 0.0801 -- 1.082 16 -- --
49.54 0.33 2.9 -0.037 0.0227 -- -0.15 -- 0.0925 1.74 -- -- -- --
49.62 0.33 2.9 -0.0325 0.0291 -- -- -- 0.0931 4.07 -- -- -- --
49.04 0.328 2.9 -0.0472 -- -0.131 -- -- 0.095 -- 1.063 16 -- --
49.09 0.328 2.9 -- 0.0118 -0.132 -- -- 0.101 16.4 1.092 16 -- --
49.66 0.329 2.9 -0.0313 -- -- -- -- 0.0938 -- -- -- -- --
49.64 0.33 2.9 -- 0.0284 -- -- -- 0.0967 4.09 -- -- -- --
49.1 0.327 2.9 -- -- -0.127 -- -- 0.1 -- 1.063 16 -- --
49.69 0.329 2.9 -- -- -- -- -- 0.0973 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 40.37 temperature 20.0 30 > th dose dependent rect. 2 1
2 40.44 temperature 20.0 30 > th dose independent rect. 2 1
4 40.44 atmosphere 1005.0 30 > th dose dependent rect. 2 1
6 40.47 atmosphere 1005.0 30 > th dose independent rect. 2 1
9 40.52 wind 3.0 30 < th dose dependent rect. 2 1
12 40.54 wind 3.0 30 < th dose independent rect. 2 1
15 40.56 humidity 80.0 30 > th dose independent rect. 2 1
19 40.59 temperature 10.0 30 > th dose independent rect. 2 1
21 40.59 temperature 30.0 30 < th dose independent rect. 2 1
22 40.59 humidity 50.0 30 > th dose independent rect. 2 1
26 40.59 atmosphere 1010.0 30 < th dose independent rect. 2 1
28 40.59 radiation 1.0 30 < th dose independent rect. 2 1
33 40.59 precipitation 0.1 30 < th dose independent rect. 2 1
34 40.59 temperature 10.0 30 > th dose independent rect. 3 23
35 40.59 humidity 50.0 30 > th dose dependent rect. 2 1
37 40.59 radiation 1.0 30 < th dose dependent rect. 2 1
42 40.59 precipitation 0.1 30 < th dose dependent rect. 2 1
48 40.89 atmosphere 1015.0 30 < th dose dependent rect. 2 1
50 41.08 temperature 30.0 30 < th dose dependent rect. 2 1
53 41.30 wind 1.0 30 > th dose independent rect. 2 1
100 42.79 wind 9.0 1440 < th dose independent rect. 3 1
101 42.79 temperature 10.0 1440 > th dose independent rect. 3 1
104 42.79 temperature 30.0 1440 < th dose independent rect. 3 1
108 42.79 humidity 50.0 1440 > th dose independent rect. 3 1
117 42.79 atmosphere 995.0 1440 > th dose independent rect. 3 1
118 42.79 radiation 1.0 1440 < th dose independent rect. 3 1
138 42.79 temperature 10.0 1440 > th dose independent rect. 4 23
141 42.79 radiation 1.0 1440 < th dose dependent rect. 3 1
162 43.29 wind 9.0 30 < th dose independent rect. 3 23
163 43.51 atmosphere 995.0 30 > th dose independent rect. 3 23
168 43.95 precipitation 0.1 30 < th dose independent rect. 3 23
169 43.95 precipitation 0.1 30 < th dose dependent rect. 3 23
201 45.71 humidity 50.0 30 > th dose independent rect. 3 23
203 45.89 temperature 30.0 30 < th dose independent rect. 3 23
247 46.56 wind 1.0 10 > th dose independent rect. 17 23
248 46.57 atmosphere 995.0 720 > th dose independent rect. 15 8
249 46.60 temperature 10.0 720 > th dose independent rect. 15 8
250 46.60 temperature 10.0 720 > th dose independent rect. 23 16
252 46.63 atmosphere 995.0 720 > th dose independent rect. 23 16
259 46.71 atmosphere 995.0 720 > th dose independent rect. 11 16
260 46.73 temperature 10.0 720 > th dose independent rect. 3 8
261 46.73 atmosphere 995.0 720 > th dose independent rect. 3 8
262 46.73 temperature 10.0 720 > th dose independent rect. 11 16
263 46.80 temperature 25.0 270 > th dose independent rect. 23 4
266 46.83 humidity 50.0 720 > th dose independent rect. 3 8
270 46.86 humidity 90.0 90 < th dose independent rect. 2 1
271 46.88 precipitation 0.1 720 < th dose independent rect. 15 8
272 46.88 precipitation 0.1 720 < th dose dependent rect. 15 8
300 47.12 wind 9.0 720 < th dose independent rect. 3 8
305 47.14 precipitation 0.1 720 < th dose independent rect. 11 16
307 47.14 precipitation 0.1 720 < th dose dependent rect. 11 16
321 47.29 wind 1.0 30 > th dose independent rect. 3 23
323 47.31 atmosphere 995.0 720 > th dose independent rect. 15 16
325 47.32 atmosphere 995.0 720 > th dose independent rect. 7 8
327 47.34 temperature 10.0 720 > th dose independent rect. 7 8
328 47.34 atmosphere 1015.0 720 < th dose independent rect. 7 8
329 47.34 temperature 10.0 720 > th dose independent rect. 15 16
333 47.36 atmosphere 995.0 720 > th dose independent rect. 17 8
334 47.36 atmosphere 995.0 720 > th dose independent rect. 1 16
338 47.38 temperature 10.0 720 > th dose independent rect. 17 8
339 47.38 radiation 30.0 720 < th dose independent rect. 17 8
341 47.38 temperature 10.0 720 > th dose independent rect. 1 16
345 47.42 atmosphere 995.0 720 > th dose independent rect. 13 16
347 47.42 atmosphere 1015.0 30 < th dose independent rect. 3 23
350 47.43 temperature 10.0 720 > th dose independent rect. 5 8
351 47.43 humidity 50.0 720 > th dose independent rect. 5 8
352 47.43 atmosphere 995.0 720 > th dose independent rect. 5 8
353 47.43 atmosphere 1015.0 720 < th dose independent rect. 5 8
354 47.43 temperature 10.0 720 > th dose independent rect. 13 16
356 47.44 precipitation 0.1 720 < th dose independent rect. 5 8
357 47.44 precipitation 0.1 720 < th dose independent rect. 15 16
358 47.44 precipitation 0.1 720 < th dose dependent rect. 5 8
359 47.44 precipitation 0.1 720 < th dose dependent rect. 15 16
363 47.47 wind 1.0 720 > th dose independent rect. 15 8
364 47.47 atmosphere 995.0 720 > th dose independent rect. 3 16
369 47.48 temperature 10.0 720 > th dose independent rect. 19 8
370 47.48 temperature 30.0 720 < th dose independent rect. 19 8
371 47.48 humidity 50.0 720 > th dose independent rect. 19 8
372 47.48 atmosphere 995.0 720 > th dose independent rect. 19 8
373 47.48 radiation 1.0 720 < th dose independent rect. 19 8
378 47.48 precipitation 0.1 720 < th dose independent rect. 19 8
379 47.48 temperature 10.0 720 > th dose independent rect. 3 16
380 47.48 temperature 25.0 270 > th dose dependent rect. 23 4
381 47.48 radiation 1.0 720 < th dose dependent rect. 19 8
386 47.48 precipitation 0.1 720 < th dose dependent rect. 19 8
393 47.52 wind 9.0 720 < th dose independent rect. 19 8
396 47.53 radiation 40.0 720 < th dose independent rect. 15 8
404 47.59 precipitation 0.1 720 < th dose independent rect. 7 8
405 47.59 precipitation 0.1 720 < th dose dependent rect. 7 8
420 47.65 wind 1.0 10 < th dose independent rect. 11 16
468 47.69 wind 1.0 10 > th dose independent sin 9 NA
471 47.69 precipitation 0.1 720 < th dose independent rect. 17 8
472 47.69 radiation 1.0 10 < th dose independent rect. 4 22
474 47.69 precipitation 0.1 720 < th dose dependent rect. 17 8
475 47.69 radiation 1.0 10 < th dose dependent rect. 4 22
503 47.72 precipitation 0.1 720 < th dose independent rect. 1 16
510 47.72 precipitation 0.1 720 < th dose dependent rect. 1 16
514 47.73 temperature 30.0 720 < th dose independent rect. 3 8
518 47.73 radiation 10.0 30 < th dose dependent rect. 15 11
525 47.75 wind 7.0 30 < th dose independent rect. 17 9
527 47.75 radiation 10.0 30 < th dose dependent rect. 17 9
528 47.76 precipitation 0.1 720 < th dose independent rect. 3 8
529 47.76 precipitation 0.1 720 < th dose dependent rect. 3 8
532 47.77 temperature 30.0 30 < th dose independent rect. 16 1
533 47.77 humidity 50.0 30 > th dose independent rect. 16 1
537 47.77 radiation 10.0 30 < th dose independent rect. 17 9
538 47.77 humidity 50.0 30 > th dose dependent rect. 16 1
542 47.78 wind 7.0 30 > th dose independent rect. 16 1
543 47.78 atmosphere 1005.0 30 > th dose independent rect. 16 1
546 47.78 wind 5.0 30 > th dose dependent rect. 16 1
567 47.79 radiation 1.0 10 < th dose independent rect. 15 11
569 47.79 radiation 40.0 720 < th dose independent rect. 15 16
570 47.79 radiation 1.0 10 < th dose independent rect. 6 20
576 47.79 atmosphere 1005.0 30 > th dose dependent rect. 16 1
584 47.80 wind 1.0 30 > th dose independent rect. 16 1
586 47.80 wind 9.0 30 < th dose independent rect. 16 1
587 47.80 temperature 25.0 10 > th dose independent rect. 16 1
588 47.80 temperature 10.0 30 > th dose independent rect. 16 1
592 47.80 humidity 90.0 30 < th dose independent rect. 16 1
593 47.80 atmosphere 995.0 30 > th dose independent rect. 16 1
595 47.80 atmosphere 1010.0 30 < th dose independent rect. 16 1
597 47.80 radiation 1.0 10 > th dose independent rect. 16 1
599 47.80 radiation 20.0 90 > th dose independent rect. 16 1
600 47.80 radiation 40.0 30 < th dose independent rect. 16 1
601 47.80 precipitation 0.1 30 < th dose independent rect. 16 1
617 47.80 temperature 10.0 30 > th dose independent rect. 17 23
621 47.80 temperature 10.0 30 > th dose dependent rect. 16 1
624 47.80 atmosphere 1010.0 30 < th dose dependent rect. 16 1
626 47.80 precipitation 0.1 30 < th dose dependent rect. 16 1
639 47.81 radiation 10.0 10 < th dose independent rect. 16 1
664 47.81 wind 9.0 30 < th dose dependent rect. 16 1
669 47.81 humidity 80.0 30 < th dose dependent rect. 16 1
671 47.81 atmosphere 995.0 30 > th dose dependent rect. 16 1
673 47.81 radiation 1.0 30 > th dose dependent rect. 16 1
675 47.81 radiation 30.0 30 < th dose dependent rect. 16 1
694 47.82 temperature 10.0 1440 > th dose independent rect. 17 1
703 47.82 radiation 30.0 1440 < th dose independent rect. 17 1
714 47.82 temperature 10.0 1440 > th dose independent rect. 18 23
719 47.82 wind 3.0 30 < th dose dependent rect. 2 6
735 47.83 radiation 40.0 720 < th dose independent rect. 15 2
791 47.84 wind 9.0 30 < th dose independent rect. 2 15
797 47.84 atmosphere 995.0 30 > th dose independent rect. 17 23
813 47.86 precipitation 0.1 720 < th dose independent rect. 23 16
820 47.86 precipitation 0.1 720 < th dose dependent rect. 23 16
823 47.87 wind 1.0 720 > th dose independent rect. 15 2
829 47.87 humidity 50.0 30 > th dose independent rect. 17 9
830 47.87 atmosphere 995.0 30 > th dose independent rect. 17 9
832 47.87 precipitation 0.1 30 < th dose independent rect. 2 15
836 47.87 precipitation 0.1 30 < th dose dependent rect. 2 15
839 47.88 temperature 10.0 30 > th dose independent rect. 17 9
844 47.88 wind 1.0 10 > th dose independent rect. 18 12
847 47.88 temperature 10.0 30 > th dose independent rect. 2 15
849 47.88 atmosphere 1015.0 30 < th dose independent rect. 2 15
861 47.88 radiation 1.0 10 < th dose dependent rect. 6 20
863 47.89 precipitation 0.1 30 < th dose independent rect. 17 9
865 47.89 atmosphere 995.0 30 > th dose independent rect. 2 15
868 47.89 precipitation 0.1 720 < th dose independent rect. 5 22
869 47.89 precipitation 0.1 30 < th dose independent rect. 17 23
870 47.89 precipitation 0.1 30 < th dose dependent rect. 17 9
871 47.89 precipitation 0.1 720 < th dose dependent rect. 5 22
872 47.89 precipitation 0.1 30 < th dose dependent rect. 17 23
891 47.90 temperature 30.0 30 < th dose dependent rect. 16 1
904 47.90 radiation 40.0 720 < th dose dependent rect. 17 8
930 47.92 precipitation 0.1 720 < th dose independent rect. 15 2
934 47.92 atmosphere 995.0 720 > th dose independent rect. 17 22
936 47.92 precipitation 0.1 720 < th dose dependent rect. 15 2
945 47.93 temperature 10.0 720 > th dose independent rect. 15 2
961 47.93 atmosphere 1015.0 720 < th dose independent rect. 15 2
987 47.94 wind 9.0 720 < th dose independent rect. 15 2
991 47.94 humidity 50.0 30 > th dose independent rect. 2 15