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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0242000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.75 (0.0424) R2 : 0.157
β1 : -0.104 (0.152) R2dD : 0.00073 R2D : -0.0424
β2 : -- (--) R2dC : -- R2C : --
β3 : -22.5 (3.3) R2dE : 2.11 R2E : -2.62
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -103 (13.3) R2dD*E : 2.75 R2D*E : -1.98
γ1 : 0.247 (0.0854) R2dN8 : 0.0201 R2N8 : -0.00905
σ : 0.747
deviance : 257.2
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_____
C
peak time of C : --
E
wheather : wind
threshold : 7
memory length : 77
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 13.3
open length of G : 0.238

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
261.37 0.76 2.76 -0.0985 0.183 -22.3 0.483 -102 0.236 10.9 6.985 76 13.1 0.792
726.47 1.26 3.04 -0.169 0.375 -20.1 0.00526 -- 0.128 22.2 9.696 81 13.3 0.434
255.21 0.744 2.76 -0.058 0.185 -21.9 -- -101 0.214 11.9 7 78 13.3 0.253
296.97 0.808 2.87 0.156 0.277 -0.421 -- -- 0.195 12.9 5.19 57 11.7 1.22
257.2 0.747 2.75 -0.104 -- -22.5 -- -103 0.247 -- 7 77 13.3 0.238
297.81 0.809 2.86 0.188 0.251 -- -0.108 -- 0.209 13.4 -- -- -- --
297.83 0.808 2.86 0.184 0.251 -- -- -- 0.208 13 -- -- -- --
283.96 0.785 2.85 0.134 -- 1.03 -- -- 0.327 -- 3.429 240 12.9 0.341
296.77 0.807 2.86 -- 0.277 -0.523 -- -- 0.228 12.8 2.262 84 10.9 0.891
301.74 0.812 2.87 0.175 -- -- -- -- 0.203 -- -- -- -- --
298.72 0.808 2.87 -- 0.248 -- -- -- 0.187 13 -- -- -- --
273.22 0.77 2.9 -- -- 2.29 -- -- 0.17 -- 4.013 239 13 0.51
302.54 0.812 2.87 -- -- -- -- -- 0.184 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 267.63 wind 5 10 > th dose independent rect. 13 1
2 268.32 wind 5 90 > th dose independent rect. 13 1
3 269.30 wind 5 10 > th dose independent rect. 13 4
7 269.93 wind 7 90 > th dose dependent rect. 13 1
8 269.94 wind 7 10 > th dose dependent rect. 13 1
24 272.00 wind 5 30 > th dose dependent rect. 12 5
34 272.77 wind 3 270 > th dose dependent rect. 13 1
41 273.27 atmosphere 1005 10 > th dose independent rect. 13 4
60 274.88 radiation 1 10 < th dose independent rect. 13 1
70 274.88 radiation 1 10 < th dose dependent rect. 13 1
82 275.04 wind 3 10 > th dose dependent rect. 13 1
90 275.52 atmosphere 1005 10 > th dose independent rect. 13 1
97 275.56 humidity 80 90 > th dose independent rect. 12 1
98 275.57 humidity 80 90 > th dose dependent rect. 12 1
174 277.22 atmosphere 1005 270 > th dose independent rect. 12 2
177 277.33 temperature 25 10 < th dose independent rect. 13 1
186 277.45 temperature 30 90 < th dose dependent rect. 12 3
217 278.28 temperature 30 90 < th dose dependent rect. 12 1
240 278.96 atmosphere 1000 10 > th dose dependent rect. 13 4
287 280.33 temperature 30 10 < th dose dependent rect. 13 2
289 280.37 atmosphere 1000 10 > th dose dependent rect. 13 1
307 280.61 wind 5 10 > th dose independent rect. 13 12
324 280.91 atmosphere 1000 270 > th dose dependent rect. 12 2
335 281.12 wind 5 10 > th dose independent rect. 9 8
337 281.12 wind 5 90 > th dose independent rect. 12 9
346 281.36 humidity 60 10 > th dose independent rect. 13 4
381 281.64 temperature 30 30 < th dose dependent rect. 12 5
397 281.87 temperature 30 90 < th dose independent rect. 12 5
399 281.91 humidity 60 10 > th dose independent rect. 13 1
407 282.14 wind 5 90 > th dose independent rect. 12 11
415 282.22 temperature 30 30 < th dose independent rect. 17 20
450 282.55 temperature 30 30 < th dose independent rect. 5 8
453 282.55 temperature 25 1440 < th dose dependent rect. 11 3
456 282.60 wind 5 10 > th dose independent rect. 13 22
486 282.87 wind 3 90 > th dose dependent rect. 12 9
498 283.00 humidity 60 270 > th dose independent rect. 13 1
513 283.21 temperature 30 90 < th dose independent rect. 12 17
517 283.26 wind 3 10 > th dose dependent rect. 12 9
527 283.41 atmosphere 1005 90 > th dose independent rect. 12 9
539 283.56 wind 5 10 > th dose independent sin 21 NA
544 283.60 wind 5 90 > th dose independent rect. 12 22
549 283.67 humidity 80 10 > th dose independent rect. 14 1
569 283.76 wind 1 90 > th dose dependent rect. 12 15
577 283.79 wind 3 90 > th dose dependent rect. 12 11
585 283.85 wind 1 90 > th dose dependent rect. 12 17
594 283.92 humidity 60 10 > th dose independent rect. 13 16
601 283.97 radiation 30 10 > th dose independent rect. 13 1
619 284.05 wind 3 10 > th dose dependent rect. 13 12
626 284.09 wind 1 10 > th dose dependent rect. 9 8
649 284.17 wind 1 10 > th dose dependent rect. 4 13
659 284.20 atmosphere 1000 90 > th dose dependent rect. 12 9
667 284.24 humidity 60 90 > th dose independent rect. 12 17
679 284.32 wind 5 10 < th dose independent rect. 21 23
689 284.39 wind 1 10 > th dose dependent rect. 2 15
696 284.43 wind 3 10 > th dose dependent rect. 6 11
723 284.56 wind 5 30 > th dose dependent rect. 12 23
728 284.59 wind 1 10 > th dose dependent rect. 13 16
729 284.60 humidity 90 10 < th dose independent rect. 13 4
801 284.87 temperature 20 10 > th dose independent rect. 13 1
816 284.92 wind 5 10 < th dose independent rect. 6 13
860 285.04 temperature 20 10 > th dose independent rect. 13 4
867 285.05 wind 1 10 > th dose independent rect. 17 19
880 285.09 atmosphere 995 90 > th dose dependent rect. 12 17
903 285.17 humidity 50 270 > th dose dependent rect. 12 2
923 285.21 atmosphere 995 10 > th dose dependent rect. 13 16
974 285.35 temperature 20 270 > th dose independent rect. 12 2
975 285.35 temperature 10 1440 > th dose independent rect. 14 4
980 285.35 temperature 10 1440 > th dose independent rect. 18 20