Os06g0241100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os06g0241100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 280.72 | 0.787 | 7.48 | 1.4 | 4.88 | -3.67 | 0.904 | -0.253 | 0.485 | 10.5 | 4.323 | 23 | 20.2 | -- |
| 280.06 | 0.785 | 7.48 | 1.4 | 4.81 | -3.35 | 0.915 | -- | 0.51 | 10.5 | 4.323 | 23 | 20.2 | -- |
| 283.33 | 0.79 | 7.48 | 1.43 | 4.8 | -3.35 | -- | -0.346 | 0.512 | 10.5 | 4.323 | 23 | 20.2 | -- |
| 282.42 | 0.783 | 7.48 | 1.44 | 4.85 | -3.65 | -- | -- | 0.499 | 10.5 | 4.216 | 19 | 20.1 | -- |
| 487.39 | 1.03 | 7.63 | 1.36 | -- | -4.94 | -- | -1.18 | 0.46 | -- | 8.613 | 4 | 6.14 | -- |
| 514.97 | 1.06 | 7.46 | 1.4 | 5.31 | -- | 1.13 | -- | 0.628 | 11.4 | -- | -- | -- | -- |
| 520.5 | 1.07 | 7.46 | 1.45 | 5.31 | -- | -- | -- | 0.633 | 11.4 | -- | -- | -- | -- |
| 479.38 | 1.02 | 7.59 | 1.42 | -- | -4.97 | -- | -- | 0.56 | -- | 16.1 | 4 | 6.33 | -- |
| 336.09 | 0.854 | 7.48 | -- | 4.81 | -3.55 | -- | -- | 0.402 | 10.5 | 4.061 | 16 | 20.1 | -- |
| 2285.64 | 2.23 | 7.58 | 1.31 | -- | -- | -- | -- | 0.578 | -- | -- | -- | -- | -- |
| 575.74 | 1.12 | 7.5 | -- | 5.29 | -- | -- | -- | 0.472 | 11.4 | -- | -- | -- | -- |
| 532.66 | 1.07 | 7.62 | -- | -- | -4.95 | -- | -- | 0.408 | -- | 16.24 | 4 | 6.4 | -- |
| 2330.78 | 2.25 | 7.62 | -- | -- | -- | -- | -- | 0.433 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 306.35 | radiation | 1.0 | 30 | > th | dose independent | sin | 2 | NA |
| 2 | 306.37 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 3 | 307.20 | radiation | 1.0 | 30 | < th | dose independent | sin | 2 | NA |
| 9 | 323.28 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 11 | 323.94 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 12 | 324.14 | radiation | 10.0 | 10 | < th | dose dependent | no | NA | NA |
| 13 | 324.20 | radiation | 10.0 | 30 | < th | dose dependent | sin | 3 | NA |
| 14 | 324.30 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 18 | 324.99 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 58 | 333.73 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 63 | 335.19 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 16 |
| 74 | 342.09 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 119 | 350.91 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 12 |
| 155 | 355.49 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 13 | 16 |
| 169 | 356.94 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 10 |
| 179 | 357.73 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 6 |
| 212 | 361.21 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 2 | 10 |
| 215 | 361.47 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 221 | 362.51 | radiation | 1.0 | 90 | > th | dose independent | rect. | 18 | 23 |
| 229 | 363.19 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 13 |
| 245 | 363.67 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 309 | 370.90 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 4 |
| 430 | 375.77 | radiation | 20.0 | 90 | < th | dose independent | rect. | 13 | 16 |
| 437 | 376.07 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 483 | 377.86 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 2 | 4 |
| 539 | 381.81 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 15 | 14 |
| 544 | 382.16 | radiation | 1.0 | 30 | < th | dose independent | rect. | 7 | 23 |
| 551 | 382.54 | radiation | 1.0 | 30 | > th | dose independent | no | NA | NA |
| 614 | 382.68 | radiation | 1.0 | 30 | < th | dose independent | no | NA | NA |
| 615 | 382.68 | radiation | 1.0 | 30 | < th | dose independent | rect. | 11 | 21 |
| 621 | 382.68 | radiation | 1.0 | 30 | < th | dose independent | rect. | 13 | 23 |
| 622 | 382.68 | radiation | 1.0 | 30 | < th | dose independent | rect. | 15 | 23 |
| 631 | 383.01 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 1 | 4 |
| 644 | 383.42 | radiation | 1.0 | 30 | < th | dose independent | rect. | 17 | 23 |
| 656 | 383.61 | radiation | 1.0 | 30 | < th | dose independent | rect. | 13 | 19 |
| 674 | 384.71 | temperature | 20.0 | 90 | > th | dose independent | rect. | 1 | 4 |
| 680 | 385.05 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 748 | 387.67 | humidity | 80.0 | 90 | > th | dose independent | rect. | 1 | 4 |
| 805 | 390.54 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 20 |
| 807 | 390.54 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 20 |
| 817 | 391.02 | radiation | 1.0 | 30 | < th | dose independent | rect. | 15 | 21 |
| 843 | 391.61 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 1 | 4 |
| 844 | 391.70 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 21 |
| 845 | 391.70 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 21 |
| 856 | 391.84 | radiation | 1.0 | 30 | < th | dose independent | rect. | 15 | 17 |
| 973 | 394.37 | wind | 9.0 | 90 | < th | dose independent | rect. | 1 | 4 |
| 974 | 394.38 | temperature | 10.0 | 90 | > th | dose independent | rect. | 1 | 4 |
| 976 | 394.38 | temperature | 30.0 | 90 | < th | dose independent | rect. | 1 | 4 |
| 977 | 394.38 | humidity | 50.0 | 90 | > th | dose independent | rect. | 1 | 4 |
| 980 | 394.38 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 1 | 4 |
| 981 | 394.38 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 1 | 4 |
| 986 | 394.38 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 20 |