Os06g0240800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Winged helix repressor DNA-binding domain containing protein.
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Os06g0240800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Winged helix repressor DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.03 | 0.373 | -5730 | -26400 | 0.0982 | -1320000 | 0.152 | -6100000 | 0.103 | 6.44 | 10.91 | 288 | -- | -- |
| 1428476131285.4 | 55700 | -4700 | -25900 | 313 | -1190000 | 351 | -- | -805 | 13 | 10.95 | 163 | -- | -- |
| 62.92 | 0.369 | -5730 | -26400 | 0.115 | -1320000 | -- | -6100000 | 0.0926 | 4.96 | 10.9 | 289 | -- | -- |
| 1126440974976.5 | 49400 | -576 | -19000 | 11400 | -1070000 | -- | -- | -4270 | 16.5 | 10.39 | 11 | -- | -- |
| 63.61 | 0.371 | -5730 | -26400 | -- | -1320000 | -- | -6100000 | 0.0952 | -- | 10.91 | 286 | -- | -- |
| 68.58 | 0.388 | 2.84 | -0.0916 | 0.0771 | -- | 0.252 | -- | 0.0817 | 7.14 | -- | -- | -- | -- |
| 68.65 | 0.388 | 2.85 | -0.0881 | 0.0892 | -- | -- | -- | 0.0803 | 5.4 | -- | -- | -- | -- |
| 916959587659.42 | 44600 | -576 | -19000 | -- | -960000 | -- | -- | -4270 | -- | 10.4 | 11 | -- | -- |
| 832045380293.32 | 42500 | 1390 | -- | 39000 | -887000 | -- | -- | -2630 | 16.4 | 10.9 | 8 | -- | -- |
| 69.06 | 0.388 | 2.85 | -0.0851 | -- | -- | -- | -- | 0.0825 | -- | -- | -- | -- | -- |
| 68.85 | 0.388 | 2.84 | -- | 0.0877 | -- | -- | -- | 0.0901 | 5.44 | -- | -- | -- | -- |
| 3970.03 | 2.93 | 5.46 | -- | -- | 28.5 | -- | -- | -3.21 | -- | 10.2 | 14 | -- | -- |
| 69.25 | 0.388 | 2.84 | -- | -- | -- | -- | -- | 0.092 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.09 | wind | 9 | 10 | > th | dose independent | rect. | 15 | 1 |
| 11 | 58.09 | wind | 9 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 329 | 65.15 | wind | 9 | 270 | > th | dose dependent | sin | 2 | NA |
| 356 | 65.24 | wind | 9 | 270 | < th | dose independent | sin | 2 | NA |
| 357 | 65.26 | wind | 9 | 270 | > th | dose independent | sin | 2 | NA |
| 427 | 65.42 | humidity | 60 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 494 | 65.58 | wind | 9 | 90 | > th | dose dependent | sin | 19 | NA |
| 563 | 65.66 | temperature | 25 | 720 | < th | dose independent | rect. | 23 | 5 |
| 605 | 65.73 | temperature | 25 | 720 | < th | dose independent | rect. | 24 | 1 |
| 619 | 65.78 | temperature | 20 | 1440 | > th | dose independent | rect. | 8 | 2 |
| 631 | 65.81 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 635 | 65.81 | temperature | 20 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 724 | 65.92 | humidity | 60 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 819 | 66.00 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 15 | 1 |
| 922 | 66.05 | temperature | 25 | 720 | > th | dose independent | rect. | 1 | 1 |
| 931 | 66.05 | wind | 9 | 270 | > th | dose dependent | no | NA | NA |
| 979 | 66.08 | temperature | 20 | 1440 | < th | dose independent | rect. | 8 | 3 |
| 988 | 66.09 | humidity | 60 | 1440 | > th | dose independent | rect. | 16 | 2 |