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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0237600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Haem peroxidase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.55 (0.0356) R2 : 0.326
β1 : 0.776 (0.13) R2dD : 0.0594 R2D : -0.00408
β2 : 1.29 (0.109) R2dC : 0.322 R2C : -0.111
β3 : -1.9 (0.144) R2dE : 0.463 R2E : -0.0697
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.204 (0.0804) R2dN8 : 0.0161 R2N8 : -0.0448
σ : 0.641
deviance : 189.61
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_____
C
peak time of C : 7.86
E
wheather : temperature
threshold : 19.86
memory length : 461
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 2.68
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
179.32 0.629 3.53 0.925 1.31 -2 1.73 0.824 0.277 7.67 19.98 459 2.82 --
179.94 0.625 3.55 0.804 1.33 -2 1.89 -- 0.244 7.6 19.81 448 2.83 --
186.87 0.637 3.52 1.11 1.36 -2.01 -- 1.5 0.288 7.73 19.63 437 2.65 --
189.61 0.641 3.55 0.776 1.29 -1.9 -- -- 0.204 7.86 19.86 461 2.68 --
223.52 0.696 3.59 0.904 -- -1.35 -- 0.572 0.191 -- 21.88 1099 2.91 --
255.44 0.749 3.67 0.318 0.44 -- 1.45 -- -0.226 8.2 -- -- -- --
261.21 0.757 3.67 0.365 0.441 -- -- -- -0.224 9.1 -- -- -- --
223.44 0.696 3.6 0.765 -- -1.23 -- -- 0.141 -- 21.4 1178 2.12 --
204.94 0.667 3.58 -- 1.22 -1.73 -- -- 0.118 7.68 20 456 2.86 --
272.43 0.771 3.69 0.364 -- -- -- -- -0.222 -- -- -- -- --
264.71 0.761 3.68 -- 0.441 -- -- -- -0.265 9.03 -- -- -- --
237.05 0.717 3.63 -- -- -1.15 -- -- 0.0143 -- 22 1068 2.84 --
275.92 0.775 3.7 -- -- -- -- -- -0.262 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 181.41 temperature 20 720 > th dose dependent rect. 20 11
2 181.61 temperature 20 720 > th dose dependent rect. 19 13
15 185.54 temperature 20 720 > th dose dependent sin 10 NA
20 186.41 temperature 30 270 < th dose dependent rect. 22 13
26 186.93 temperature 10 270 > th dose dependent sin 7 NA
68 189.64 temperature 30 720 < th dose dependent sin 11 NA
74 189.85 temperature 30 720 < th dose dependent rect. 21 8
84 190.40 temperature 25 720 < th dose dependent rect. 23 4
86 190.47 temperature 30 270 < th dose dependent sin 7 NA
103 191.30 temperature 30 720 < th dose dependent rect. 18 15
510 201.07 temperature 10 10 > th dose dependent sin 5 NA
562 201.93 temperature 25 720 < th dose dependent rect. 9 23
567 202.01 temperature 25 720 < th dose dependent rect. 7 23
585 202.17 temperature 25 720 < th dose dependent no NA NA
698 203.95 temperature 25 720 < th dose dependent rect. 3 23
802 205.38 radiation 30 4320 < th dose independent rect. 15 17
829 205.71 radiation 20 4320 > th dose dependent rect. 16 15
860 206.15 temperature 25 4320 > th dose independent rect. 20 1
871 206.28 temperature 20 1440 > th dose dependent rect. 20 1
879 206.36 temperature 30 4320 < th dose dependent rect. 19 2
886 206.46 temperature 10 4320 > th dose dependent rect. 19 2
911 206.66 temperature 25 4320 < th dose independent rect. 20 1
1000 207.13 temperature 25 4320 < th dose independent rect. 19 3