Os06g0237400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Xyloglucan endotransglycosylase precursor (EC 2.4.1.207).
FiT-DB / Search/ Help/ Sample detail
|
Os06g0237400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Xyloglucan endotransglycosylase precursor (EC 2.4.1.207).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 183.33 | 0.636 | 3.08 | 0.182 | 0.0467 | 5.59 | 0.541 | 10.4 | -0.0759 | 14.6 | 9.862 | 10 | -- | -- |
| 184.32 | 0.632 | 3.08 | 0.123 | 0.0517 | 2.59 | 0.617 | -- | -0.0939 | 15 | 9.8 | 10 | -- | -- |
| 183.67 | 0.631 | 3.08 | 0.25 | 0.0195 | 8.24 | -- | 17.9 | -0.0498 | 18.5 | 10 | 11 | -- | -- |
| 185.32 | 0.634 | 3.07 | 0.134 | 0.0495 | 2.63 | -- | -- | -0.0736 | 15.1 | 9.82 | 10 | -- | -- |
| 183.61 | 0.631 | 3.09 | 0.222 | -- | 8.35 | -- | 18.6 | -0.0751 | -- | 10 | 10 | -- | -- |
| 201.65 | 0.666 | 3.07 | 0.0461 | 0.0949 | -- | 0.346 | -- | -0.104 | 14.4 | -- | -- | -- | -- |
| 202.02 | 0.666 | 3.07 | 0.0557 | 0.104 | -- | -- | -- | -0.102 | 15.7 | -- | -- | -- | -- |
| 185.46 | 0.634 | 3.07 | 0.133 | -- | 2.65 | -- | -- | -0.0746 | -- | 9.817 | 10 | -- | -- |
| 185.79 | 0.635 | 3.07 | -- | 0.0477 | 2.59 | -- | -- | -0.0888 | 15 | 9.823 | 10 | -- | -- |
| 202.62 | 0.665 | 3.07 | 0.0513 | -- | -- | -- | -- | -0.105 | -- | -- | -- | -- | -- |
| 202.1 | 0.665 | 3.07 | -- | 0.103 | -- | -- | -- | -0.108 | 15.7 | -- | -- | -- | -- |
| 185.92 | 0.635 | 3.07 | -- | -- | 2.61 | -- | -- | -0.0896 | -- | 9.82 | 11 | -- | -- |
| 202.69 | 0.665 | 3.07 | -- | -- | -- | -- | -- | -0.11 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 186.17 | wind | 9 | 10 | > th | dose dependent | rect. | 15 | 4 |
| 5 | 186.40 | wind | 9 | 10 | > th | dose dependent | sin | 16 | NA |
| 12 | 186.75 | wind | 9 | 10 | > th | dose dependent | rect. | 15 | 21 |
| 52 | 188.64 | wind | 9 | 10 | > th | dose dependent | rect. | 11 | 8 |
| 53 | 188.67 | wind | 9 | 30 | > th | dose independent | rect. | 17 | 1 |
| 57 | 188.73 | wind | 9 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 68 | 188.95 | wind | 9 | 90 | > th | dose dependent | rect. | 16 | 18 |
| 146 | 189.34 | wind | 9 | 10 | > th | dose dependent | no | NA | NA |
| 225 | 189.34 | wind | 9 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 298 | 190.14 | wind | 5 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 333 | 190.40 | wind | 9 | 90 | > th | dose independent | rect. | 16 | 18 |
| 360 | 190.49 | wind | 5 | 90 | > th | dose independent | rect. | 8 | 1 |
| 469 | 190.81 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 15 |
| 484 | 190.90 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 15 |
| 492 | 190.93 | wind | 3 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 548 | 191.12 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 8 |
| 611 | 191.21 | temperature | 25 | 720 | > th | dose independent | sin | 21 | NA |
| 618 | 191.24 | temperature | 25 | 720 | < th | dose independent | sin | 21 | NA |
| 628 | 191.29 | wind | 7 | 90 | > th | dose dependent | rect. | 4 | 6 |
| 636 | 191.35 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 11 |
| 638 | 191.36 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 9 |
| 647 | 191.48 | wind | 7 | 90 | > th | dose independent | rect. | 4 | 6 |
| 673 | 191.58 | temperature | 20 | 14400 | < th | dose dependent | rect. | 1 | 18 |
| 680 | 191.60 | temperature | 20 | 14400 | < th | dose dependent | rect. | 12 | 19 |
| 757 | 191.69 | temperature | 20 | 14400 | < th | dose dependent | no | NA | NA |
| 768 | 191.69 | temperature | 20 | 14400 | < th | dose dependent | rect. | 4 | 23 |
| 800 | 191.72 | temperature | 20 | 14400 | < th | dose dependent | sin | 3 | NA |
| 818 | 191.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 9 |
| 827 | 191.74 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 14 |
| 847 | 191.75 | temperature | 20 | 14400 | < th | dose dependent | sin | 14 | NA |
| 919 | 191.81 | temperature | 20 | 14400 | < th | dose dependent | rect. | 1 | 10 |
| 957 | 191.85 | temperature | 20 | 14400 | < th | dose independent | rect. | 2 | 15 |
| 964 | 191.85 | temperature | 20 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 995 | 191.88 | temperature | 20 | 14400 | < th | dose dependent | rect. | 4 | 3 |