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Os06g0237200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to DNA polymerase lambda.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.33 (0.026) R2 : 0.712
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.28 (0.068) R2dC : 0.715 R2C : 0.712
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0431 (0.0547) R2dN8 : 0.000508 R2N8 : -0.00282
σ : 0.49
deviance : 109.64
__
_____
C
peak time of C : 17.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
93.44 0.454 7.37 -0.0478 2.29 -0.336 1.07 -2.61 0.0171 17.4 1.1 4396 -- --
94.96 0.454 7.33 0.366 2.29 -0.514 0.864 -- 0.128 17.5 19.63 3584 -- --
96.1 0.457 7.36 -0.053 2.29 -0.31 -- -2.49 0.0192 17.4 1.1 4358 -- --
96.52 0.458 7.33 0.424 2.33 -0.574 -- -- 0.13 17.5 19.64 3533 -- --
365.89 0.891 7.33 -0.0625 -- -0.354 -- -2.35 0.0317 -- 1.02 4311 -- --
101.5 0.472 7.32 0.469 2.28 -- 0.991 -- 0.0906 17.5 -- -- -- --
103.92 0.477 7.32 0.466 2.29 -- -- -- 0.095 17.5 -- -- -- --
366.48 0.892 7.25 0.282 -- -0.565 -- -- 0.206 -- 30.58 21533 -- --
99.74 0.465 7.32 -- 2.38 -0.662 -- -- 0.0996 17.5 19.98 3586 -- --
376.95 0.907 7.29 0.389 -- -- -- -- 0.0389 -- -- -- -- --
109.64 0.49 7.33 -- 2.28 -- -- -- 0.0431 17.5 -- -- -- --
367.6 0.893 7.25 -- -- -0.583 -- -- 0.189 -- 29.07 24410 -- --
380.95 0.911 7.3 -- -- -- -- -- -0.00427 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 84.71 wind 7.0 270 < th dose independent rect. 7 20
2 85.55 wind 7.0 270 < th dose independent rect. 7 10
7 86.42 wind 9.0 270 < th dose dependent rect. 7 20
9 86.50 temperature 10.0 270 > th dose dependent rect. 3 4
10 86.51 wind 7.0 10 < th dose independent rect. 8 22
19 86.92 temperature 15.0 90 > th dose dependent rect. 5 3
23 87.08 atmosphere 1015.0 90 < th dose dependent rect. 6 1
27 87.27 radiation 1.0 270 > th dose independent rect. 7 11
30 87.39 atmosphere 1010.0 90 < th dose independent rect. 6 1
33 87.45 temperature 15.0 270 > th dose independent rect. 7 10
34 87.49 precipitation 0.1 270 < th dose independent rect. 7 20
35 87.49 precipitation 0.1 270 < th dose dependent rect. 7 20
42 87.71 temperature 15.0 90 > th dose independent rect. 8 21
45 87.77 temperature 25.0 90 > th dose independent rect. 4 4
48 87.81 temperature 15.0 10 > th dose dependent rect. 6 2
50 87.85 humidity 50.0 270 > th dose independent rect. 17 14
53 87.95 atmosphere 1000.0 90 > th dose independent rect. 7 23
54 87.95 temperature 15.0 90 > th dose dependent rect. 6 1
55 87.96 humidity 80.0 270 > th dose independent rect. 3 4
58 87.99 radiation 1.0 270 > th dose independent rect. 7 22
69 88.01 wind 5.0 270 < th dose independent rect. 3 4
70 88.03 precipitation 0.1 270 < th dose independent rect. 7 10
71 88.03 precipitation 0.1 270 < th dose dependent rect. 7 10
73 88.05 wind 5.0 90 < th dose independent rect. 5 3
82 88.12 radiation 10.0 270 < th dose independent rect. 3 4
83 88.13 wind 1.0 90 > th dose independent rect. 6 1
91 88.22 atmosphere 1000.0 10 > th dose independent rect. 8 22
92 88.24 atmosphere 1010.0 270 < th dose independent rect. 3 4
93 88.24 radiation 1.0 270 < th dose dependent rect. 3 17
95 88.26 temperature 10.0 270 > th dose independent rect. 3 4
97 88.26 temperature 30.0 270 < th dose independent rect. 3 4
98 88.26 humidity 50.0 270 > th dose independent rect. 3 4
100 88.26 atmosphere 995.0 270 > th dose independent rect. 3 4
109 88.31 radiation 40.0 90 < th dose independent rect. 5 3
111 88.32 radiation 1.0 270 < th dose independent rect. 3 17
112 88.32 precipitation 0.1 90 < th dose independent rect. 7 23
113 88.32 precipitation 0.1 90 < th dose dependent rect. 7 23
114 88.33 wind 1.0 90 > th dose independent rect. 5 3
116 88.33 temperature 10.0 90 > th dose independent rect. 5 3
118 88.33 temperature 30.0 90 < th dose independent rect. 5 3
119 88.33 humidity 50.0 90 > th dose independent rect. 5 3
121 88.33 atmosphere 995.0 90 > th dose independent rect. 5 3
122 88.33 atmosphere 1015.0 90 < th dose independent rect. 5 3
123 88.33 atmosphere 1000.0 270 > th dose independent rect. 21 6
125 88.34 precipitation 0.1 90 < th dose independent rect. 5 3
126 88.34 precipitation 0.1 270 < th dose independent rect. 3 4
128 88.34 precipitation 0.1 90 < th dose dependent rect. 5 3
129 88.34 precipitation 0.1 270 < th dose dependent rect. 3 4
130 88.35 atmosphere 1000.0 90 > th dose independent rect. 8 21
135 88.39 atmosphere 995.0 270 > th dose dependent rect. 22 4
137 88.40 temperature 15.0 90 > th dose independent rect. 7 23
143 88.46 atmosphere 1000.0 270 > th dose independent rect. 22 4
145 88.49 wind 9.0 270 < th dose dependent rect. 3 4
147 88.50 radiation 40.0 90 < th dose dependent rect. 6 1
149 88.51 wind 9.0 90 < th dose dependent rect. 5 3
150 88.54 wind 5.0 90 < th dose independent rect. 6 1
153 88.55 temperature 10.0 90 > th dose independent rect. 6 1
155 88.55 temperature 30.0 90 < th dose independent rect. 6 1
156 88.55 humidity 50.0 90 > th dose independent rect. 6 1
158 88.55 atmosphere 995.0 90 > th dose independent rect. 6 1
160 88.55 radiation 40.0 90 < th dose independent rect. 6 1
161 88.55 wind 5.0 10 < th dose independent rect. 6 2
167 88.57 precipitation 0.1 90 < th dose independent rect. 6 1
169 88.57 precipitation 0.1 90 < th dose dependent rect. 6 1
177 88.60 radiation 20.0 270 < th dose independent rect. 17 14
179 88.61 radiation 40.0 270 < th dose dependent rect. 3 4
182 88.62 atmosphere 1015.0 270 < th dose independent rect. 7 10
183 88.62 temperature 10.0 270 > th dose independent rect. 17 14
194 88.66 atmosphere 1015.0 90 < th dose dependent rect. 5 3
207 88.69 radiation 1.0 90 > th dose independent rect. 5 3
219 88.70 atmosphere 1015.0 270 < th dose dependent rect. 3 4
220 88.72 temperature 25.0 90 > th dose independent rect. 6 1
232 88.78 atmosphere 995.0 270 > th dose independent rect. 17 14
234 88.79 radiation 40.0 10 < th dose independent rect. 6 2
235 88.79 radiation 30.0 270 < th dose dependent rect. 16 15
243 88.84 temperature 10.0 10 > th dose independent rect. 6 2
245 88.84 temperature 30.0 10 < th dose independent rect. 6 2
246 88.84 humidity 50.0 10 > th dose independent rect. 6 2
248 88.84 atmosphere 995.0 10 > th dose independent rect. 6 2
249 88.84 atmosphere 1015.0 10 < th dose independent rect. 6 2
250 88.84 temperature 10.0 10 > th dose independent rect. 8 22
255 88.88 wind 1.0 10 > th dose independent rect. 6 2
259 88.89 wind 9.0 90 < th dose dependent rect. 6 1
260 88.90 precipitation 0.1 10 < th dose independent rect. 6 2
262 88.90 precipitation 0.1 10 < th dose dependent rect. 6 2
271 88.95 humidity 50.0 270 > th dose dependent rect. 3 4
276 88.98 wind 9.0 270 < th dose dependent rect. 7 10
280 89.00 humidity 70.0 43200 > th dose independent rect. 18 12
282 89.01 temperature 25.0 30 > th dose independent rect. 1 7
290 89.06 humidity 50.0 90 > th dose dependent rect. 6 1
297 89.09 wind 9.0 10 < th dose dependent rect. 6 2
307 89.12 wind 9.0 270 < th dose independent rect. 17 14
341 89.19 atmosphere 1015.0 10 < th dose dependent rect. 6 2
349 89.23 humidity 70.0 43200 < th dose independent rect. 18 12
371 89.30 humidity 50.0 270 > th dose independent rect. 3 17
442 89.46 atmosphere 1000.0 10 > th dose independent rect. 23 7
443 89.46 atmosphere 995.0 270 > th dose independent rect. 7 10
445 89.47 humidity 70.0 43200 > th dose independent sin 11 NA
448 89.48 humidity 70.0 43200 < th dose independent sin 11 NA
451 89.49 wind 1.0 43200 < th dose independent rect. 13 14
463 89.53 humidity 50.0 90 > th dose dependent rect. 5 3
476 89.55 humidity 60.0 43200 > th dose dependent rect. 20 1
477 89.55 wind 3.0 43200 < th dose dependent rect. 20 4
486 89.58 wind 9.0 4320 < th dose independent rect. 7 2
496 89.59 humidity 50.0 10 > th dose dependent rect. 6 3
497 89.59 humidity 60.0 43200 > th dose dependent rect. 3 8
500 89.60 humidity 60.0 43200 > th dose dependent rect. 19 3
504 89.61 humidity 70.0 43200 > th dose independent rect. 17 17
525 89.63 radiation 1.0 90 > th dose independent rect. 6 1
550 89.65 humidity 90.0 90 < th dose independent rect. 6 1
566 89.66 temperature 10.0 1440 > th dose independent rect. 7 2
570 89.66 humidity 50.0 1440 > th dose independent rect. 7 2
572 89.66 atmosphere 995.0 1440 > th dose independent rect. 7 2
573 89.66 atmosphere 1015.0 1440 < th dose independent rect. 7 2
576 89.66 temperature 10.0 1440 > th dose independent rect. 9 22
586 89.67 humidity 50.0 43200 > th dose dependent rect. 16 20
602 89.70 humidity 50.0 43200 > th dose dependent rect. 2 10
615 89.73 wind 1.0 90 > th dose dependent rect. 6 1
617 89.73 humidity 60.0 43200 > th dose dependent rect. 18 5
634 89.76 atmosphere 1015.0 270 < th dose independent rect. 3 18
648 89.77 humidity 90.0 43200 < th dose dependent rect. 17 19
649 89.77 atmosphere 995.0 90 > th dose dependent rect. 8 21
663 89.79 wind 7.0 270 < th dose independent rect. 21 6
696 89.82 humidity 90.0 43200 < th dose dependent rect. 18 5
718 89.85 temperature 25.0 10 > th dose dependent rect. 1 7
722 89.86 radiation 1.0 10 > th dose independent rect. 6 2
728 89.86 humidity 90.0 43200 < th dose dependent rect. 17 7
740 89.88 humidity 50.0 43200 > th dose dependent sin 5 NA
751 89.89 wind 9.0 270 < th dose dependent rect. 22 4
775 89.91 wind 1.0 43200 < th dose dependent rect. 12 15
820 89.94 humidity 50.0 43200 > th dose dependent rect. 1 23
824 89.95 humidity 50.0 43200 > th dose dependent no NA NA
849 89.96 temperature 25.0 10 > th dose dependent rect. 22 10
850 89.96 humidity 50.0 43200 > th dose dependent rect. 3 23
851 89.96 humidity 50.0 43200 > th dose dependent rect. 6 23
852 89.96 humidity 50.0 43200 > th dose dependent rect. 22 23
868 89.97 humidity 50.0 43200 > th dose dependent rect. 8 23
891 89.99 humidity 90.0 43200 < th dose dependent rect. 16 10
915 90.00 humidity 90.0 43200 < th dose dependent rect. 8 22
921 90.01 humidity 90.0 43200 < th dose dependent no NA NA
936 90.02 temperature 10.0 270 > th dose independent rect. 21 6
937 90.02 temperature 30.0 270 < th dose independent rect. 21 6
939 90.02 humidity 50.0 270 > th dose independent rect. 21 6
943 90.02 radiation 1.0 270 < th dose independent rect. 21 6
949 90.02 temperature 10.0 270 > th dose independent rect. 3 18
950 90.02 humidity 90.0 43200 < th dose dependent rect. 20 1
956 90.02 wind 9.0 270 < th dose dependent rect. 21 6
957 90.02 radiation 1.0 270 < th dose dependent rect. 21 6
973 90.03 wind 1.0 43200 > th dose independent rect. 16 10
976 90.03 humidity 90.0 43200 < th dose dependent sin 15 NA
988 90.03 humidity 90.0 43200 < th dose dependent rect. 1 23
989 90.03 humidity 90.0 43200 < th dose dependent rect. 3 23
994 90.03 humidity 90.0 43200 < th dose dependent rect. 20 23
996 90.04 wind 1.0 43200 < th dose independent rect. 16 10