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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0230200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.85 (0.017) R2 : 0.00825
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0697 (0.0358) R2dN8 : 0.0107 R2N8 : 0.00825
σ : 0.32
deviance : 47.08
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
45.72 0.318 2.86 0.007 0.101 0.172 0.125 -0.522 0.0312 3.22 40.43 698 -- --
46.01 0.316 2.85 0.066 0.104 0.143 0.23 -- 0.0567 3.14 37.21 695 -- --
45.76 0.315 2.86 0.00352 0.102 0.174 -- -0.581 0.0308 3.13 40.46 693 -- --
46.19 0.317 2.85 0.0656 0.101 0.143 -- -- 0.0546 3.3 37.19 694 -- --
46.24 0.317 2.86 0.0198 -- 0.111 -- -0.476 0.0433 -- 40.75 774 -- --
46.62 0.32 2.85 0.0712 0.0694 -- 0.0904 -- 0.077 23.7 -- -- -- --
46.64 0.32 2.85 0.068 0.0707 -- -- -- 0.0769 22.9 -- -- -- --
46.37 0.317 2.85 0.0503 -- 0.143 -- -- 0.0483 -- 37.23 990 -- --
46.29 0.317 2.85 -- 0.102 0.143 -- -- 0.0512 3.17 37.19 694 -- --
46.95 0.32 2.85 0.0695 -- -- -- -- 0.0774 -- -- -- -- --
46.76 0.32 2.85 -- 0.0712 -- -- -- 0.0694 23 -- -- -- --
46.47 0.317 2.85 -- -- 0.153 -- -- 0.0489 -- 37.27 990 -- --
47.08 0.32 2.85 -- -- -- -- -- 0.0697 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 44.58 wind 3.0 30 < th dose independent rect. 22 1
2 44.58 temperature 25.0 30 > th dose independent rect. 22 1
3 44.58 humidity 80.0 30 > th dose independent rect. 22 1
4 44.58 temperature 10.0 30 > th dose dependent rect. 22 1
9 44.59 wind 5.0 30 < th dose dependent rect. 22 1
13 44.60 wind 1.0 30 > th dose independent rect. 22 1
16 44.60 temperature 10.0 30 > th dose independent rect. 22 1
18 44.60 temperature 30.0 30 < th dose independent rect. 22 1
19 44.60 humidity 50.0 30 > th dose independent rect. 22 1
22 44.60 atmosphere 995.0 30 > th dose independent rect. 22 1
23 44.60 atmosphere 1010.0 30 < th dose independent rect. 22 1
25 44.60 radiation 1.0 30 < th dose independent rect. 22 1
30 44.60 temperature 10.0 30 > th dose independent rect. 23 23
31 44.60 humidity 50.0 30 > th dose dependent rect. 22 1
34 44.60 atmosphere 995.0 30 > th dose dependent rect. 22 1
37 44.60 radiation 1.0 30 < th dose dependent rect. 22 1
42 44.61 wind 9.0 1440 < th dose independent rect. 23 1
43 44.61 temperature 10.0 1440 > th dose independent rect. 23 1
46 44.61 temperature 30.0 1440 < th dose independent rect. 23 1
50 44.61 humidity 50.0 1440 > th dose independent rect. 23 1
61 44.61 atmosphere 995.0 1440 > th dose independent rect. 23 1
62 44.61 radiation 1.0 1440 < th dose independent rect. 23 1
82 44.61 temperature 10.0 1440 > th dose independent rect. 24 23
86 44.61 radiation 1.0 1440 < th dose dependent rect. 23 1
93 44.62 humidity 90.0 30 < th dose independent rect. 22 1
95 44.62 precipitation 0.1 30 < th dose independent rect. 22 1
96 44.62 precipitation 0.1 30 < th dose dependent rect. 22 1
97 44.63 atmosphere 1015.0 30 < th dose dependent rect. 22 1
102 44.71 wind 1.0 30 > th dose dependent rect. 22 1
104 44.71 humidity 90.0 30 < th dose dependent rect. 22 1
108 44.74 temperature 30.0 30 < th dose dependent rect. 22 1
155 45.12 wind 7.0 30 > th dose dependent rect. 1 10
161 45.13 wind 9.0 30 > th dose independent rect. 1 10
169 45.13 wind 7.0 10 > th dose dependent rect. 9 2
199 45.14 wind 5.0 10 > th dose independent rect. 10 1
203 45.14 humidity 60.0 10 < th dose independent rect. 10 1
212 45.14 humidity 60.0 10 < th dose dependent rect. 10 1
351 45.26 wind 9.0 30 < th dose independent rect. 23 23
426 45.39 wind 3.0 30 > th dose independent rect. 14 1
427 45.39 temperature 25.0 30 > th dose independent rect. 14 1
428 45.39 temperature 10.0 1440 > th dose independent rect. 15 1
433 45.39 humidity 60.0 30 > th dose independent rect. 14 1
434 45.39 atmosphere 1005.0 30 > th dose independent rect. 14 1
435 45.39 temperature 10.0 1440 > th dose independent rect. 16 23
439 45.39 wind 1.0 30 > th dose dependent rect. 14 1
440 45.39 temperature 15.0 30 > th dose dependent rect. 14 1
450 45.40 wind 7.0 30 < th dose independent rect. 14 1
452 45.40 temperature 10.0 30 > th dose independent rect. 14 1
455 45.40 temperature 30.0 30 < th dose independent rect. 14 1
457 45.40 atmosphere 995.0 30 > th dose independent rect. 14 1
459 45.40 atmosphere 1010.0 30 < th dose independent rect. 14 1
461 45.40 radiation 1.0 30 > th dose independent rect. 14 1
463 45.40 radiation 30.0 30 > th dose independent rect. 14 1
464 45.40 radiation 40.0 30 < th dose independent rect. 14 1
465 45.40 precipitation 0.1 30 < th dose independent rect. 14 1
466 45.40 temperature 10.0 30 > th dose independent rect. 15 23
467 45.40 precipitation 0.1 30 < th dose independent rect. 23 23
472 45.40 atmosphere 995.0 30 > th dose dependent rect. 14 1
474 45.40 radiation 1.0 30 > th dose dependent rect. 14 1
476 45.40 precipitation 0.1 30 < th dose dependent rect. 14 1
486 45.40 precipitation 0.1 30 < th dose dependent rect. 23 23
489 45.41 humidity 70.0 30 < th dose independent rect. 14 1
544 45.42 humidity 50.0 30 > th dose dependent rect. 14 1
545 45.42 humidity 90.0 30 < th dose dependent rect. 14 1
546 45.42 atmosphere 1015.0 30 < th dose dependent rect. 14 1
554 45.44 wind 9.0 30 < th dose dependent rect. 14 1
556 45.45 temperature 25.0 30 > th dose independent rect. 20 3
558 45.46 precipitation 0.1 720 < th dose independent rect. 7 8
559 45.46 humidity 90.0 10 < th dose dependent rect. 24 1
560 45.46 precipitation 0.1 720 < th dose dependent rect. 7 8
562 45.48 humidity 70.0 30 > th dose independent rect. 18 1
563 45.49 temperature 25.0 30 > th dose independent rect. 18 5
565 45.49 temperature 20.0 30 > th dose dependent rect. 23 8
571 45.50 atmosphere 1005.0 30 > th dose dependent rect. 18 1
573 45.50 temperature 20.0 30 > th dose dependent rect. 23 4
577 45.51 radiation 40.0 720 > th dose independent rect. 11 3
579 45.52 temperature 30.0 30 < th dose independent rect. 18 1
592 45.53 temperature 10.0 720 > th dose independent rect. 19 8
593 45.53 temperature 30.0 720 < th dose independent rect. 19 8
594 45.53 humidity 50.0 720 > th dose independent rect. 19 8
595 45.53 atmosphere 995.0 720 > th dose independent rect. 19 8
596 45.53 radiation 1.0 720 < th dose independent rect. 19 8
601 45.53 temperature 10.0 720 > th dose independent rect. 3 16
603 45.53 humidity 70.0 30 > th dose dependent rect. 18 1
607 45.53 radiation 1.0 720 < th dose dependent rect. 19 8
619 45.54 temperature 25.0 270 > th dose independent rect. 20 3
625 45.54 temperature 10.0 720 > th dose independent rect. 7 8
626 45.54 atmosphere 1015.0 720 < th dose independent rect. 7 8
635 45.54 temperature 10.0 720 > th dose independent rect. 15 16
638 45.54 radiation 40.0 720 > th dose independent rect. 11 22
639 45.54 atmosphere 995.0 30 > th dose independent rect. 23 23
649 45.55 temperature 20.0 720 > th dose dependent rect. 23 1
654 45.56 wind 9.0 4320 < th dose independent rect. 13 1
689 45.58 wind 9.0 720 < th dose independent rect. 19 8
693 45.58 temperature 20.0 30 > th dose dependent rect. 23 12
694 45.59 wind 9.0 4320 > th dose independent rect. 13 1
696 45.59 temperature 30.0 30 < th dose dependent rect. 18 1
706 45.60 wind 9.0 720 < th dose independent rect. 7 8
707 45.60 atmosphere 1015.0 720 < th dose independent rect. 3 16
712 45.60 temperature 20.0 30 > th dose dependent rect. 23 10
714 45.61 wind 7.0 4320 > th dose dependent rect. 13 1
716 45.61 wind 9.0 4320 > th dose dependent rect. 4 10
723 45.61 wind 9.0 4320 > th dose dependent rect. 23 15
749 45.63 temperature 30.0 720 > th dose independent rect. 13 1
760 45.64 radiation 40.0 720 > th dose independent sin 16 NA
764 45.64 wind 5.0 720 > th dose independent rect. 13 3
775 45.65 wind 9.0 4320 > th dose independent rect. 4 11
781 45.65 radiation 40.0 720 < th dose independent rect. 15 16
784 45.65 wind 9.0 4320 > th dose dependent rect. 10 4
786 45.65 atmosphere 1005.0 30 > th dose dependent rect. 18 5
793 45.65 atmosphere 1005.0 30 > th dose dependent rect. 14 9
804 45.66 wind 9.0 4320 < th dose independent rect. 23 16
818 45.67 wind 5.0 720 > th dose independent rect. 14 1
830 45.67 precipitation 0.1 720 < th dose independent rect. 3 16
849 45.67 precipitation 0.1 720 < th dose dependent rect. 3 16
859 45.68 wind 9.0 4320 < th dose independent rect. 4 11
914 45.69 precipitation 0.1 30 < th dose independent rect. 15 23
923 45.69 wind 9.0 4320 > th dose dependent rect. 18 21
924 45.69 precipitation 0.1 30 < th dose dependent rect. 15 23
948 45.70 temperature 25.0 10 > th dose independent rect. 14 15
957 45.70 radiation 20.0 10 > th dose independent rect. 14 20
986 45.71 temperature 25.0 30 > th dose independent rect. 14 10