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Os06g0228900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.82 (0.0295) R2 : 0.508
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.66 (0.0774) R2dC : 0.497 R2C : 0.496
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.179 (0.0622) R2dN8 : 0.0116 R2N8 : 0.0104
σ : 0.557
deviance : 141.78
__
_____
C
peak time of C : 17.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
133.08 0.542 5.79 -0.099 1.91 0.518 1.22 0.669 -0.0954 17.5 89 129 -- --
133.9 0.539 5.8 -0.071 1.9 0.544 0.937 -- -0.0898 17.6 89.76 134 -- --
135.86 0.543 5.8 -0.0781 1.9 0.492 -- 0.176 -0.0893 17.5 88.96 128 -- --
135.87 0.543 5.8 -0.069 1.89 0.491 -- -- -0.0903 17.5 89 128 -- --
190.29 0.642 5.82 -0.0281 -- -1.72 -- 1.2 -0.328 -- 62.2 411 -- --
140.64 0.556 5.82 -0.0144 1.65 -- 0.687 -- -0.184 17.8 -- -- -- --
141.77 0.558 5.82 -0.0184 1.66 -- -- -- -0.181 17.7 -- -- -- --
188.48 0.639 5.81 -0.0204 -- -1.61 -- -- -0.309 -- 63.89 410 -- --
135.99 0.543 5.8 -- 1.88 0.483 -- -- -0.0843 17.5 89 128 -- --
284.15 0.788 5.79 -0.0702 -- -- -- -- -0.22 -- -- -- -- --
141.78 0.557 5.82 -- 1.66 -- -- -- -0.179 17.7 -- -- -- --
188.49 0.639 5.81 -- -- -1.61 -- -- -0.308 -- 63.97 410 -- --
284.28 0.787 5.79 -- -- -- -- -- -0.212 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 116.10 atmosphere 1010.0 90 < th dose independent rect. 3 15
6 119.13 atmosphere 1010.0 90 < th dose independent rect. 3 18
7 119.32 atmosphere 1010.0 270 < th dose independent rect. 1 16
11 119.58 wind 7.0 90 < th dose independent rect. 3 15
21 120.45 temperature 30.0 270 < th dose dependent rect. 6 7
24 120.62 temperature 15.0 270 > th dose independent rect. 2 15
29 120.95 atmosphere 995.0 270 > th dose dependent rect. 6 6
31 121.06 atmosphere 1010.0 270 < th dose independent rect. 10 9
35 121.23 temperature 30.0 270 < th dose dependent rect. 7 4
41 121.43 wind 9.0 90 < th dose dependent rect. 3 15
46 121.83 temperature 10.0 270 > th dose dependent rect. 2 15
48 121.89 temperature 30.0 270 < th dose independent rect. 6 6
54 121.94 wind 9.0 270 < th dose dependent rect. 1 16
57 122.06 atmosphere 995.0 10 > th dose dependent rect. 8 6
66 122.22 temperature 15.0 1440 > th dose independent rect. 9 6
67 122.23 temperature 30.0 270 < th dose dependent rect. 8 2
74 122.33 temperature 10.0 270 > th dose dependent rect. 18 7
83 122.55 temperature 15.0 270 > th dose independent rect. 17 9
84 122.56 temperature 30.0 90 < th dose independent rect. 6 22
91 122.71 radiation 40.0 270 < th dose independent rect. 6 20
97 122.80 radiation 40.0 270 < th dose independent rect. 6 7
133 123.31 radiation 40.0 270 < th dose dependent rect. 6 20
144 123.50 wind 7.0 270 < th dose independent rect. 11 19
148 123.55 radiation 10.0 90 < th dose dependent rect. 17 10
153 123.60 wind 5.0 90 < th dose independent rect. 4 2
155 123.60 humidity 50.0 270 > th dose dependent rect. 6 6
166 123.69 atmosphere 1015.0 10 < th dose dependent rect. 4 15
171 123.74 wind 1.0 270 > th dose independent rect. 5 7
172 123.75 wind 7.0 90 < th dose dependent rect. 4 2
184 123.85 temperature 15.0 1440 > th dose independent rect. 9 8
188 123.89 precipitation 0.1 10 < th dose independent rect. 6 22
190 123.89 precipitation 0.1 10 < th dose dependent rect. 6 22
191 123.90 radiation 1.0 90 < th dose independent rect. 17 10
194 123.92 temperature 15.0 30 > th dose independent rect. 6 22
205 124.03 radiation 20.0 270 < th dose independent rect. 17 9
222 124.11 atmosphere 1000.0 270 > th dose independent rect. 6 6
224 124.11 wind 1.0 270 > th dose independent rect. 5 21
225 124.11 precipitation 0.1 90 < th dose independent rect. 6 22
228 124.11 precipitation 0.1 90 < th dose dependent rect. 6 22
229 124.12 humidity 50.0 90 > th dose independent rect. 6 22
236 124.13 temperature 30.0 10 < th dose dependent rect. 4 2
240 124.14 wind 1.0 270 > th dose independent rect. 6 19
247 124.19 wind 9.0 270 < th dose independent rect. 17 9
251 124.20 wind 7.0 270 < th dose independent rect. 11 7
253 124.20 radiation 40.0 270 < th dose dependent rect. 17 9
254 124.21 humidity 50.0 270 > th dose independent rect. 17 9
256 124.23 wind 5.0 270 < th dose independent rect. 1 5
257 124.24 precipitation 0.1 90 < th dose independent rect. 4 2
259 124.24 precipitation 0.1 90 < th dose dependent rect. 4 2
263 124.28 temperature 10.0 90 > th dose independent rect. 4 2
265 124.28 temperature 30.0 90 < th dose independent rect. 4 2
266 124.28 humidity 50.0 90 > th dose independent rect. 4 2
269 124.28 atmosphere 995.0 90 > th dose independent rect. 4 2
270 124.28 atmosphere 1010.0 90 < th dose independent rect. 4 2
272 124.28 radiation 20.0 90 < th dose independent rect. 4 2
278 124.30 humidity 50.0 270 > th dose dependent rect. 7 4
283 124.34 atmosphere 995.0 90 > th dose dependent rect. 4 2
296 124.40 temperature 10.0 270 > th dose independent rect. 6 6
298 124.40 atmosphere 1015.0 270 < th dose independent rect. 6 6
299 124.40 temperature 10.0 270 > th dose independent rect. 12 18
303 124.41 wind 5.0 90 < th dose dependent rect. 3 5
305 124.42 precipitation 0.1 270 < th dose independent rect. 17 9
307 124.42 precipitation 0.1 270 < th dose dependent rect. 17 9
328 124.48 precipitation 0.1 10 < th dose independent rect. 4 2
331 124.48 atmosphere 995.0 90 > th dose independent rect. 6 22
333 124.48 radiation 40.0 90 < th dose dependent rect. 4 2
334 124.48 precipitation 0.1 10 < th dose dependent rect. 4 2
336 124.48 atmosphere 995.0 10 > th dose dependent rect. 8 8
340 124.50 atmosphere 995.0 270 > th dose independent rect. 17 9
345 124.51 precipitation 0.1 270 < th dose independent rect. 2 15
346 124.51 precipitation 0.1 270 < th dose dependent rect. 2 15
360 124.55 precipitation 0.1 270 < th dose independent rect. 6 6
361 124.55 atmosphere 1015.0 270 < th dose independent rect. 17 8
362 124.55 atmosphere 1015.0 270 < th dose independent rect. 6 19
365 124.55 precipitation 0.1 270 < th dose dependent rect. 6 6
368 124.56 wind 9.0 10 < th dose independent rect. 4 2
369 124.56 temperature 10.0 10 > th dose independent rect. 4 2
371 124.56 temperature 30.0 10 < th dose independent rect. 4 2
372 124.56 humidity 50.0 10 > th dose independent rect. 4 2
375 124.56 atmosphere 995.0 10 > th dose independent rect. 4 2
376 124.56 atmosphere 1010.0 10 < th dose independent rect. 4 2
378 124.56 radiation 20.0 10 < th dose independent rect. 4 2
414 124.61 temperature 30.0 270 < th dose independent rect. 19 16
415 124.61 atmosphere 995.0 10 > th dose independent rect. 6 22
426 124.65 wind 9.0 270 < th dose dependent rect. 1 5
429 124.66 temperature 30.0 90 < th dose dependent rect. 3 4
441 124.70 temperature 15.0 1440 > th dose independent rect. 7 8
476 124.80 wind 9.0 270 < th dose independent rect. 6 6
487 124.82 humidity 50.0 90 > th dose dependent rect. 4 2
498 124.87 wind 1.0 270 > th dose independent rect. 17 9
520 124.95 humidity 50.0 270 > th dose independent rect. 6 6
544 125.00 temperature 10.0 270 > th dose independent rect. 1 5
546 125.00 temperature 30.0 270 < th dose independent rect. 1 5
547 125.00 humidity 50.0 270 > th dose independent rect. 1 5
550 125.00 atmosphere 995.0 270 > th dose independent rect. 1 5
551 125.00 atmosphere 1015.0 270 < th dose independent rect. 1 5
552 125.00 radiation 20.0 270 < th dose independent rect. 1 5
557 125.00 temperature 10.0 270 > th dose independent rect. 6 19
566 125.02 temperature 15.0 10 > th dose independent rect. 19 9
570 125.03 temperature 30.0 90 < th dose independent rect. 17 10
576 125.04 atmosphere 995.0 270 > th dose independent rect. 2 15
592 125.10 temperature 10.0 10 > th dose dependent rect. 21 7
595 125.11 temperature 10.0 270 > th dose dependent rect. 10 8
624 125.15 humidity 50.0 90 > th dose dependent rect. 3 5
627 125.17 temperature 15.0 90 > th dose independent rect. 3 18
648 125.18 radiation 1.0 270 < th dose dependent rect. 3 2
651 125.19 radiation 40.0 90 < th dose dependent rect. 3 5
662 125.21 temperature 30.0 270 < th dose dependent rect. 1 5
663 125.21 radiation 40.0 270 < th dose dependent rect. 1 5
681 125.27 radiation 1.0 270 < th dose independent rect. 3 2
686 125.27 radiation 1.0 270 < th dose dependent rect. 2 4
700 125.30 humidity 50.0 270 > th dose dependent rect. 1 5
704 125.33 temperature 10.0 43200 > th dose independent rect. 9 6
707 125.33 humidity 50.0 10 > th dose dependent rect. 4 2
710 125.34 atmosphere 1010.0 90 < th dose independent rect. 3 5
717 125.36 atmosphere 1015.0 90 < th dose independent rect. 8 19
722 125.37 precipitation 0.1 270 < th dose independent rect. 12 18
727 125.37 precipitation 0.1 270 < th dose dependent rect. 12 18
732 125.39 precipitation 0.1 270 < th dose independent rect. 6 19
736 125.39 precipitation 0.1 270 < th dose dependent rect. 6 19
746 125.42 humidity 70.0 90 > th dose independent rect. 3 5
747 125.42 radiation 20.0 90 < th dose independent rect. 3 5
748 125.42 precipitation 0.1 270 < th dose independent rect. 1 5
749 125.42 humidity 50.0 270 > th dose dependent rect. 8 1
751 125.42 precipitation 0.1 270 < th dose dependent rect. 1 5
760 125.45 wind 9.0 4320 < th dose independent rect. 5 2
796 125.48 radiation 1.0 90 < th dose dependent rect. 10 17
799 125.49 temperature 15.0 10 > th dose independent rect. 8 20
800 125.49 atmosphere 1015.0 90 < th dose independent rect. 6 21
808 125.50 radiation 1.0 90 < th dose dependent rect. 13 14
811 125.51 temperature 30.0 270 < th dose independent rect. 21 14
837 125.58 temperature 10.0 1440 > th dose independent rect. 5 2
840 125.58 temperature 30.0 1440 < th dose independent rect. 5 2
844 125.58 humidity 50.0 1440 > th dose independent rect. 5 2
849 125.58 atmosphere 995.0 1440 > th dose independent rect. 5 2
850 125.58 atmosphere 1015.0 1440 < th dose independent rect. 5 2
851 125.58 radiation 40.0 1440 < th dose independent rect. 5 2
857 125.58 temperature 10.0 1440 > th dose independent rect. 7 22
870 125.60 precipitation 0.1 10 < th dose independent rect. 8 20
876 125.60 precipitation 0.1 10 < th dose dependent rect. 8 20
896 125.62 atmosphere 995.0 270 > th dose independent rect. 12 18
900 125.63 wind 5.0 10 < th dose independent rect. 4 4
906 125.63 radiation 1.0 90 < th dose dependent rect. 4 6
908 125.63 atmosphere 1015.0 10 < th dose dependent rect. 4 17
910 125.64 precipitation 0.1 10 < th dose independent rect. 19 9
912 125.64 precipitation 0.1 10 < th dose dependent rect. 19 9
948 125.70 wind 3.0 90 < th dose dependent rect. 3 11
949 125.71 temperature 15.0 270 > th dose independent rect. 10 9
998 125.78 atmosphere 995.0 270 > th dose independent rect. 6 19