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Os06g0227300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.53 (0.0526) R2 : 0.486
β1 : -2.87 (0.198) R2dD : 0.262 R2D : 0.0743
β2 : 1.04 (0.136) R2dC : 0.0655 R2C : 0.0492
β3 : 2.24 (0.147) R2dE : 0.274 R2E : 0.131
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.706 (0.112) R2dN8 : 0.0603 R2N8 : 0.0154
σ : 0.983
deviance : 445.59
__
_____
C
peak time of C : 19
E
wheather : temperature
threshold : 27.1
memory length : 1284
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
445.89 0.992 6.46 -2.75 1 2.15 -1.07 0.361 -0.505 18.4 28.31 1246 -- --
444.57 0.982 6.51 -2.92 1.01 2.28 -0.926 -- -0.692 18.3 27.24 1263 -- --
446.72 0.984 6.53 -2.9 1.02 2.22 -- -0.378 -0.602 18.9 27.94 1267 -- --
445.59 0.983 6.53 -2.87 1.04 2.24 -- -- -0.706 19 27.1 1284 -- --
494.97 1.04 6.51 -2.97 -- 2.56 -- -0.283 -0.774 -- 26.6 1067 -- --
658.92 1.2 6.52 -2.15 1 -- 1.32 -- -0.712 21.1 -- -- -- --
662.46 1.21 6.52 -2.19 1.04 -- -- -- -0.708 20.3 -- -- -- --
494.68 1.04 6.51 -2.88 -- 2.53 -- -- -0.763 -- 26.6 1064 -- --
642.31 1.18 6.38 -- 1.03 1.71 -- -- -0.0774 19.2 30.3 1224 -- --
722.3 1.26 6.5 -2.19 -- -- -- -- -0.719 -- -- -- -- --
788.39 1.31 6.47 -- 1.05 -- -- -- -0.464 20.2 -- -- -- --
697.25 1.23 6.36 -- -- 1.75 -- -- -0.107 -- 30.3 1132 -- --
849.09 1.36 6.44 -- -- -- -- -- -0.476 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 440.02 temperature 30 14400 > th dose dependent rect. 17 2
32 446.81 humidity 70 1440 > th dose independent rect. 17 11
35 446.93 humidity 70 1440 > th dose independent rect. 17 8
38 447.00 humidity 70 1440 > th dose independent rect. 17 3
44 447.14 temperature 30 14400 > th dose independent rect. 17 2
60 447.36 temperature 30 14400 < th dose independent rect. 17 12
62 447.41 humidity 70 1440 < th dose independent rect. 16 4
74 447.42 temperature 30 14400 < th dose independent rect. 17 14
87 447.59 temperature 30 14400 < th dose independent rect. 17 8
95 447.84 temperature 30 14400 < th dose independent rect. 17 3
110 449.81 humidity 70 1440 > th dose independent sin 12 NA
133 450.47 humidity 80 1440 < th dose dependent rect. 18 1
172 451.73 temperature 30 14400 > th dose dependent sin 12 NA
174 451.83 humidity 80 1440 < th dose dependent rect. 16 4
220 454.71 temperature 30 1440 > th dose independent rect. 16 3
246 455.12 temperature 30 1440 < th dose independent rect. 16 8
247 455.13 temperature 30 1440 < th dose independent rect. 16 4
254 455.36 temperature 30 1440 < th dose independent rect. 15 21
255 455.41 humidity 70 1440 < th dose independent sin 13 NA
256 455.46 temperature 30 1440 < th dose independent rect. 16 12
259 455.56 temperature 30 1440 < th dose independent rect. 16 10
273 455.83 humidity 60 14400 < th dose independent rect. 17 1
283 456.04 temperature 30 1440 < th dose independent sin 12 NA
300 456.34 temperature 30 1440 < th dose independent rect. 17 19
301 456.35 temperature 30 1440 > th dose dependent sin 16 NA
303 456.39 temperature 30 1440 > th dose independent sin 12 NA
312 456.77 temperature 30 1440 > th dose dependent rect. 11 8
326 456.81 temperature 30 1440 > th dose dependent rect. 15 22
361 457.02 temperature 30 1440 > th dose dependent rect. 13 23
378 457.06 temperature 30 1440 > th dose independent rect. 15 21
417 457.34 temperature 30 1440 > th dose dependent no NA NA
531 457.53 temperature 30 1440 > th dose independent rect. 17 19
554 458.10 temperature 25 1440 > th dose dependent rect. 15 4
559 458.17 temperature 30 1440 > th dose dependent sin 10 NA
584 458.60 temperature 30 14400 > th dose independent sin 12 NA
587 458.72 temperature 30 14400 < th dose independent sin 12 NA
647 459.54 temperature 25 1440 > th dose dependent rect. 18 1
720 460.03 temperature 30 1440 < th dose independent rect. 9 20
726 460.07 temperature 30 1440 < th dose independent rect. 9 22
732 460.10 temperature 30 1440 < th dose independent rect. 9 15
741 460.14 temperature 30 1440 < th dose independent rect. 9 11
742 460.14 temperature 30 1440 < th dose independent rect. 9 13
812 460.71 humidity 60 14400 > th dose independent rect. 17 2
915 461.36 temperature 30 1440 < th dose independent rect. 6 22
932 461.40 temperature 30 1440 < th dose independent rect. 2 22
941 461.42 temperature 30 1440 < th dose independent rect. 6 18
943 461.42 temperature 30 1440 < th dose independent rect. 23 21
944 461.42 temperature 30 1440 < th dose independent rect. 21 23
945 461.42 temperature 30 1440 < th dose independent rect. 23 23
946 461.43 temperature 30 1440 < th dose independent no NA NA
964 461.45 temperature 30 1440 < th dose independent rect. 2 18
976 461.46 temperature 30 1440 < th dose independent rect. 6 14