Os06g0225600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0225600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 140.18 | 0.556 | 8.63 | 1.5 | 1.56 | 2.55 | -0.487 | 3.2 | -0.218 | 21.7 | 1016 | 4336 | -- | -- |
| 147.97 | 0.567 | 8.6 | 1.76 | 1.59 | 1.62 | -0.172 | -- | -0.202 | 21.5 | 1016 | 4326 | -- | -- |
| 141.02 | 0.553 | 8.63 | 1.51 | 1.56 | 2.58 | -- | 3.31 | -0.219 | 21.7 | 1016 | 4363 | -- | -- |
| 142.35 | 0.556 | 8.59 | 1.67 | 1.57 | 1.01 | -- | -- | -0.161 | 21.6 | 1014 | 5353 | -- | -- |
| 285.1 | 0.786 | 8.59 | 1.5 | -- | 2.62 | -- | 3.53 | -0.221 | -- | 1016 | 4302 | -- | -- |
| 167.49 | 0.607 | 8.63 | 1.4 | 1.57 | -- | -0.391 | -- | -0.323 | 21.6 | -- | -- | -- | -- |
| 168.06 | 0.607 | 8.63 | 1.42 | 1.57 | -- | -- | -- | -0.323 | 21.6 | -- | -- | -- | -- |
| 285.94 | 0.788 | 8.55 | 1.58 | -- | 1.13 | -- | -- | -0.179 | -- | 1013 | 4461 | -- | -- |
| 203.33 | 0.664 | 8.64 | -- | 1.56 | 0.995 | -- | -- | -0.384 | 21.8 | 1014 | 4123 | -- | -- |
| 313.79 | 0.828 | 8.59 | 1.43 | -- | -- | -- | -- | -0.326 | -- | -- | -- | -- | -- |
| 221.08 | 0.696 | 8.66 | -- | 1.57 | -- | -- | -- | -0.481 | 21.7 | -- | -- | -- | -- |
| 348.7 | 0.87 | 8.6 | -- | -- | 1.01 | -- | -- | -0.384 | -- | 1014 | 4205 | -- | -- |
| 367.82 | 0.895 | 8.62 | -- | -- | -- | -- | -- | -0.485 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 137.11 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 20 |
| 3 | 137.26 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 4 | 137.26 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 5 | 137.72 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 6 | 138.07 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 7 | 138.07 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 10 | 138.33 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 12 | 138.44 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 13 | 138.57 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 14 | 138.58 | wind | 9.0 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 15 | 138.62 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 16 | 138.69 | wind | 9.0 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 19 | 138.77 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 6 |
| 25 | 138.99 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 29 | 139.15 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 18 |
| 35 | 139.32 | wind | 9.0 | 14400 | > th | dose independent | rect. | 5 | 7 |
| 60 | 140.02 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 61 | 140.02 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 67 | 140.15 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 73 | 140.48 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 74 | 140.48 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 82 | 140.58 | wind | 9.0 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 89 | 140.70 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 6 | 17 |
| 122 | 141.01 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 8 | 2 |
| 130 | 141.08 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 21 | NA |
| 153 | 141.25 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 179 | 141.38 | atmosphere | 1015.0 | 4320 | > th | dose dependent | no | NA | NA |
| 182 | 141.38 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 15 | 23 |
| 192 | 141.42 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 11 | 23 |
| 215 | 141.50 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 6 |
| 235 | 141.57 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 280 | 141.74 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 7 | 14 |
| 286 | 141.77 | atmosphere | 1015.0 | 4320 | > th | dose independent | sin | 21 | NA |
| 287 | 141.77 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 7 | 14 |
| 290 | 141.79 | atmosphere | 1015.0 | 4320 | < th | dose independent | sin | 21 | NA |
| 474 | 142.39 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 21 |
| 486 | 142.44 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 9 | 6 |
| 533 | 142.57 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 535 | 142.57 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 542 | 142.58 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 10 | NA |
| 566 | 142.65 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 620 | 142.78 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 19 | 2 |
| 631 | 142.79 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 654 | 142.85 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 661 | 142.87 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 687 | 142.92 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 12 | 22 |
| 755 | 143.03 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 757 | 143.04 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 16 | 6 |
| 804 | 143.10 | atmosphere | 1015.0 | 4320 | < th | dose independent | no | NA | NA |
| 824 | 143.12 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 11 | 22 |
| 853 | 143.18 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 3 | 9 |
| 860 | 143.20 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 17 | 5 |
| 863 | 143.20 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 16 | 23 |
| 868 | 143.21 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 19 | 2 |
| 885 | 143.23 | atmosphere | 1015.0 | 4320 | > th | dose independent | no | NA | NA |
| 894 | 143.24 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 18 | 23 |
| 914 | 143.28 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 11 | 4 |
| 918 | 143.29 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 11 | 4 |
| 940 | 143.33 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 16 | 23 |
| 963 | 143.38 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 8 | 4 |
| 985 | 143.42 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 3 |