Os06g0225300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SERK1 (Fragment).
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Os06g0225300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SERK1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.77 | 0.369 | 10.1 | -0.0382 | 1.5 | 1.21 | -1.08 | 0.576 | 0.303 | 7.82 | 30.77 | 269 | -- | -- |
| 62.1 | 0.367 | 10.1 | 0.0555 | 1.5 | 1.24 | -1.06 | -- | 0.312 | 7.86 | 31.45 | 269 | -- | -- |
| 64.61 | 0.374 | 10.1 | -0.0534 | 1.58 | 1.14 | -- | 0.479 | 0.317 | 7.86 | 29.01 | 179 | -- | -- |
| 64.95 | 0.375 | 10.1 | 0.0221 | 1.56 | 1.14 | -- | -- | 0.328 | 7.85 | 30.15 | 201 | -- | -- |
| 149.84 | 0.57 | 10.1 | 0.424 | -- | 2.55 | -- | -0.528 | 0.527 | -- | 35.29 | 509 | -- | -- |
| 80.52 | 0.421 | 10.1 | -0.245 | 1.77 | -- | -0.809 | -- | 0.105 | 7.22 | -- | -- | -- | -- |
| 82.26 | 0.425 | 10.1 | -0.262 | 1.77 | -- | -- | -- | 0.107 | 7.19 | -- | -- | -- | -- |
| 150.05 | 0.571 | 10.1 | 0.335 | -- | 2.53 | -- | -- | 0.503 | -- | 46.24 | 509 | -- | -- |
| 64.96 | 0.375 | 10.1 | -- | 1.55 | 1.15 | -- | -- | 0.325 | 7.85 | 30.32 | 210 | -- | -- |
| 248.36 | 0.736 | 10.1 | -0.23 | -- | -- | -- | -- | 0.138 | -- | -- | -- | -- | -- |
| 84.07 | 0.429 | 10.1 | -- | 1.77 | -- | -- | -- | 0.136 | 7.2 | -- | -- | -- | -- |
| 152.77 | 0.576 | 10.1 | -- | -- | 2.42 | -- | -- | 0.451 | -- | 36.82 | 508 | -- | -- |
| 249.75 | 0.738 | 10.1 | -- | -- | -- | -- | -- | 0.163 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.05 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 23 | 21 |
| 2 | 59.34 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 22 |
| 3 | 59.43 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 14 | 59.90 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 13 | 22 |
| 43 | 60.56 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 74 | 61.00 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 88 | 61.25 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 16 | 22 |
| 155 | 61.87 | temperature | 30.0 | 270 | < th | dose dependent | no | NA | NA |
| 158 | 61.91 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 167 | 61.95 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 171 | 61.99 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 184 | 62.06 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 188 | 62.10 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 6 | 13 |
| 210 | 62.23 | temperature | 15.0 | 270 | > th | dose dependent | no | NA | NA |
| 225 | 62.33 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 22 | 13 |
| 245 | 62.40 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 19 | 20 |
| 288 | 62.63 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 8 | 12 |
| 310 | 62.73 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 6 | 21 |
| 329 | 62.84 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 330 | 62.84 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 402 | 63.11 | temperature | 25.0 | 90 | > th | dose independent | rect. | 24 | 20 |
| 458 | 63.28 | temperature | 25.0 | 90 | > th | dose independent | rect. | 2 | 18 |
| 471 | 63.33 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 9 | 9 |
| 485 | 63.36 | temperature | 25.0 | 90 | > th | dose independent | rect. | 8 | 12 |
| 523 | 63.46 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 543 | 63.52 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 16 | 20 |
| 546 | 63.53 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 594 | 63.64 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 633 | 63.73 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 707 | 63.90 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 820 | 64.20 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 6 |
| 830 | 64.21 | temperature | 15.0 | 720 | > th | dose dependent | sin | 1 | NA |
| 834 | 64.22 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 861 | 64.28 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 955 | 64.44 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 14 | 4 |