Os06g0223900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os06g0223900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 287.68 | 0.797 | 3.21 | -0.812 | 0.174 | 1.68 | -1.41 | -0.252 | -0.0698 | 14.7 | 94 | 155 | -- | -- |
| 287.72 | 0.79 | 3.2 | -0.813 | 0.172 | 1.67 | -1.39 | -- | -0.0691 | 14.7 | 94 | 155 | -- | -- |
| 293.74 | 0.798 | 3.2 | -0.851 | 0.191 | 1.72 | -- | 0.7 | -0.0691 | 15 | 94 | 154 | -- | -- |
| 294.08 | 0.799 | 3.21 | -0.853 | 0.209 | 1.8 | -- | -- | -0.068 | 15.7 | 94 | 154 | -- | -- |
| 295.56 | 0.801 | 3.2 | -0.832 | -- | 1.6 | -- | 0.683 | -0.0891 | -- | 94 | 155 | -- | -- |
| 314.11 | 0.831 | 3.23 | -0.743 | 0.138 | -- | 1.72 | -- | -0.195 | 3.59 | -- | -- | -- | -- |
| 321.91 | 0.84 | 3.23 | -0.771 | 0.219 | -- | -- | -- | -0.206 | 6.44 | -- | -- | -- | -- |
| 295.91 | 0.801 | 3.21 | -0.839 | -- | 1.61 | -- | -- | -0.0816 | -- | 94 | 155 | -- | -- |
| 313.13 | 0.824 | 3.19 | -- | 0.21 | 1.67 | -- | -- | 0.00487 | 15.6 | 94 | 154 | -- | -- |
| 324.39 | 0.842 | 3.24 | -0.765 | -- | -- | -- | -- | -0.201 | -- | -- | -- | -- | -- |
| 337.58 | 0.859 | 3.21 | -- | 0.209 | -- | -- | -- | -0.12 | 6.65 | -- | -- | -- | -- |
| 314.84 | 0.826 | 3.19 | -- | -- | 1.49 | -- | -- | -0.00283 | -- | 94 | 155 | -- | -- |
| 339.85 | 0.86 | 3.22 | -- | -- | -- | -- | -- | -0.116 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 285.89 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 4 | 8 |
| 3 | 286.09 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 4 | 4 |
| 13 | 287.23 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 4 | 2 |
| 15 | 287.60 | wind | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 19 | 288.74 | humidity | 90.0 | 30 | > th | dose independent | rect. | 4 | 4 |
| 34 | 289.33 | humidity | 90.0 | 10 | > th | dose independent | rect. | 4 | 2 |
| 38 | 289.95 | humidity | 90.0 | 30 | > th | dose independent | rect. | 4 | 8 |
| 43 | 290.39 | wind | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 82 | 292.40 | wind | 1.0 | 270 | < th | dose dependent | rect. | 2 | 3 |
| 106 | 293.35 | humidity | 90.0 | 90 | > th | dose dependent | sin | 3 | NA |
| 134 | 294.08 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 4 |
| 153 | 294.35 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 1 | 11 |
| 158 | 294.43 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 7 |
| 163 | 294.49 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 1 | 18 |
| 173 | 294.63 | temperature | 20.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 191 | 294.85 | wind | 3.0 | 30 | < th | dose dependent | rect. | 4 | 5 |
| 193 | 294.87 | temperature | 25.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 196 | 294.91 | humidity | 90.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 226 | 295.19 | wind | 7.0 | 30 | > th | dose independent | rect. | 13 | 1 |
| 245 | 295.32 | wind | 7.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 248 | 295.33 | wind | 7.0 | 90 | > th | dose dependent | rect. | 13 | 1 |
| 318 | 295.86 | temperature | 20.0 | 30 | > th | dose independent | rect. | 4 | 19 |
| 328 | 295.93 | wind | 7.0 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 354 | 296.11 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 365 | 296.22 | humidity | 90.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 396 | 296.39 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 428 | 296.51 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 4 | 4 |
| 438 | 296.56 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 469 | 296.59 | temperature | 15.0 | 30 | > th | dose independent | rect. | 23 | 5 |
| 487 | 296.68 | wind | 9.0 | 30 | < th | dose independent | rect. | 23 | 5 |
| 490 | 296.70 | temperature | 30.0 | 30 | < th | dose independent | rect. | 23 | 5 |
| 491 | 296.70 | humidity | 50.0 | 30 | > th | dose independent | rect. | 23 | 5 |
| 494 | 296.70 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 23 | 5 |
| 495 | 296.70 | radiation | 1.0 | 30 | < th | dose independent | rect. | 23 | 5 |
| 501 | 296.70 | temperature | 10.0 | 30 | > th | dose independent | rect. | 4 | 19 |
| 503 | 296.70 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 4 | 19 |
| 504 | 296.70 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 5 |
| 537 | 296.94 | wind | 9.0 | 30 | < th | dose independent | rect. | 4 | 19 |
| 543 | 296.96 | wind | 9.0 | 30 | < th | dose dependent | rect. | 23 | 5 |
| 561 | 297.07 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 10 | 20 |
| 597 | 297.24 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 4 | 19 |
| 644 | 297.41 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 648 | 297.42 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 23 | 5 |
| 650 | 297.42 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 23 | 5 |
| 690 | 297.58 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 23 | 5 |
| 715 | 297.66 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 19 |
| 721 | 297.66 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 4 | 19 |
| 730 | 297.70 | humidity | 90.0 | 30 | > th | dose independent | rect. | 4 | 18 |
| 799 | 297.92 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 11 |
| 824 | 297.94 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 23 | 5 |
| 834 | 297.97 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 4 | 5 |
| 857 | 298.03 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 4 | 5 |
| 874 | 298.10 | wind | 9.0 | 30 | < th | dose dependent | rect. | 4 | 19 |
| 882 | 298.13 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 4 | 5 |
| 886 | 298.14 | temperature | 20.0 | 30 | > th | dose independent | rect. | 4 | 2 |
| 897 | 298.16 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 4 | 19 |
| 912 | 298.23 | humidity | 90.0 | 270 | > th | dose dependent | no | NA | NA |
| 938 | 298.36 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 954 | 298.44 | humidity | 90.0 | 90 | > th | dose independent | sin | 4 | NA |
| 967 | 298.49 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 973 | 298.52 | wind | 1.0 | 90 | < th | dose independent | rect. | 4 | 12 |