Os06g0223800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os06g0223800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 187.76 | 0.644 | 10.2 | -2.52 | 0.437 | 1.76 | 1.73 | -1.95 | -0.00586 | 2.84 | 28.75 | 1263 | -- | -- |
| 188.8 | 0.64 | 10.2 | -2.24 | 0.412 | 1.63 | 1.65 | -- | -0.036 | 3 | 28.35 | 1256 | -- | -- |
| 197.08 | 0.654 | 10.2 | -2.32 | 0.45 | 1.66 | -- | -0.645 | -0.00978 | 3.84 | 28.62 | 1246 | -- | -- |
| 197.19 | 0.654 | 10.1 | -2.2 | 0.458 | 1.59 | -- | -- | 0.038 | 3.71 | 28.85 | 1245 | -- | -- |
| 208.24 | 0.672 | 10.2 | -2.31 | -- | 1.74 | -- | -0.522 | -0.00599 | -- | 28.43 | 1243 | -- | -- |
| 301.07 | 0.813 | 10.2 | -1.69 | 0.659 | -- | 2.11 | -- | -0.154 | 2.54 | -- | -- | -- | -- |
| 316.63 | 0.833 | 10.2 | -1.74 | 0.676 | -- | -- | -- | -0.167 | 2.96 | -- | -- | -- | -- |
| 208.25 | 0.672 | 10.2 | -2.2 | -- | 1.68 | -- | -- | -0.000316 | -- | 28.4 | 1243 | -- | -- |
| 316.05 | 0.828 | 10.1 | -- | 0.464 | 1.28 | -- | -- | 0.307 | 3.67 | 30.32 | 1197 | -- | -- |
| 342.9 | 0.865 | 10.2 | -1.71 | -- | -- | -- | -- | -0.15 | -- | -- | -- | -- | -- |
| 396.57 | 0.932 | 10.1 | -- | 0.642 | -- | -- | -- | 0.027 | 2.94 | -- | -- | -- | -- |
| 327.78 | 0.843 | 10.1 | -- | -- | 1.35 | -- | -- | 0.332 | -- | 30.3 | 1197 | -- | -- |
| 420.29 | 0.957 | 10.1 | -- | -- | -- | -- | -- | 0.0405 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 191.28 | temperature | 30 | 1440 | < th | dose independent | sin | 11 | NA |
| 2 | 191.29 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 20 |
| 5 | 191.48 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 20 | 191.71 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 22 | 191.74 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 20 |
| 24 | 191.81 | temperature | 30 | 1440 | > th | dose independent | sin | 11 | NA |
| 30 | 191.92 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 40 | 192.00 | temperature | 30 | 1440 | > th | dose dependent | rect. | 16 | 22 |
| 49 | 192.20 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 9 |
| 83 | 192.27 | temperature | 30 | 1440 | > th | dose dependent | sin | 18 | NA |
| 105 | 192.36 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 201 | 192.40 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 275 | 193.07 | temperature | 30 | 1440 | > th | dose dependent | sin | 10 | NA |
| 391 | 194.28 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 424 | 194.85 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 439 | 194.96 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 448 | 195.21 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 462 | 195.22 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 506 | 195.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 22 |
| 509 | 195.41 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 519 | 195.42 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 579 | 195.57 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 589 | 195.84 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 699 | 195.99 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 716 | 196.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 788 | 196.82 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 16 |