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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0220600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.6 (0.0535) R2 : 0.143
β1 : 0.446 (0.195) R2dD : 0.0102 R2D : 0.0108
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.14 (0.313) R2dE : 0.0262 R2E : 0.023
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.45 (1.25) R2dD*E : 0.051 R2D*E : 0.0273
γ1 : -0.541 (0.115) R2dN8 : 0.0571 R2N8 : 0.0619
σ : 0.996
deviance : 457.31
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 998.4
memory length : 5650
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
449.75 0.996 3.59 0.434 0.288 1 1.13 5.91 -0.544 5.28 998.5 5942 -- --
467.21 1.01 3.6 0.329 0.317 1.03 1.22 -- -0.517 5.17 1000 9198 -- --
452.39 0.991 3.6 0.435 0.302 1.11 -- 6.33 -0.546 4.18 998.4 5686 -- --
470.44 1.01 3.61 0.312 0.327 1 -- -- -0.532 4.46 1000 9240 -- --
457.31 0.996 3.6 0.446 -- 1.14 -- 6.45 -0.541 -- 998.4 5650 -- --
485.35 1.03 3.62 0.442 0.295 -- 1.2 -- -0.603 5.46 -- -- -- --
488.49 1.04 3.63 0.444 0.311 -- -- -- -0.609 4.43 -- -- -- --
475.86 1.02 3.62 0.317 -- 0.913 -- -- -0.528 -- 998.4 9886 -- --
472.75 1.01 3.62 -- 0.332 1.06 -- -- -0.559 4.35 999.9 9524 -- --
493.68 1.04 3.63 0.456 -- -- -- -- -0.601 -- -- -- -- --
493.68 1.04 3.64 -- 0.32 -- -- -- -0.659 4.4 -- -- -- --
478.48 1.02 3.62 -- -- 0.964 -- -- -0.559 -- 998.5 9941 -- --
499.17 1.04 3.64 -- -- -- -- -- -0.652 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 430.89 wind 3 14400 < th dose independent rect. 20 1
2 433.63 wind 3 14400 > th dose independent rect. 19 3
4 433.80 wind 5 14400 < th dose dependent rect. 19 2
16 437.25 wind 1 14400 > th dose dependent rect. 19 1
19 437.69 wind 3 14400 < th dose independent rect. 16 7
20 437.71 wind 1 14400 > th dose dependent rect. 18 4
46 440.32 humidity 80 43200 < th dose independent rect. 20 1
51 440.57 humidity 70 43200 > th dose independent rect. 18 15
53 440.71 wind 5 14400 < th dose dependent rect. 16 7
55 440.77 wind 1 14400 > th dose dependent rect. 16 6
57 440.95 wind 9 14400 < th dose dependent rect. 16 6
61 441.19 humidity 70 43200 < th dose independent rect. 18 12
70 441.31 humidity 70 43200 < th dose independent rect. 18 9
75 441.64 wind 1 43200 > th dose independent rect. 4 2
80 441.73 humidity 70 43200 < th dose independent rect. 17 16
81 441.75 humidity 80 43200 > th dose independent rect. 20 2
96 442.38 humidity 70 43200 < th dose dependent rect. 14 1
102 442.65 humidity 80 43200 < th dose independent rect. 19 3
106 442.81 humidity 70 43200 < th dose independent sin 10 NA
111 443.00 humidity 70 43200 < th dose dependent rect. 21 20
120 443.14 humidity 70 43200 < th dose dependent rect. 11 22
123 443.17 humidity 70 43200 < th dose dependent rect. 13 21
136 443.29 humidity 70 43200 < th dose dependent rect. 11 20
143 443.35 humidity 70 43200 > th dose independent rect. 18 9
185 443.59 humidity 70 43200 > th dose independent rect. 18 6
189 443.60 humidity 70 43200 > th dose independent sin 10 NA
206 443.67 humidity 70 43200 < th dose dependent no NA NA
213 443.69 humidity 70 43200 < th dose dependent rect. 13 16
216 443.69 humidity 70 43200 < th dose dependent rect. 23 23
224 443.73 humidity 70 43200 < th dose dependent rect. 11 6
238 443.76 humidity 70 43200 < th dose dependent rect. 4 23
254 443.81 humidity 70 43200 < th dose dependent rect. 8 9
271 443.87 humidity 60 43200 < th dose independent rect. 12 21
295 443.95 humidity 70 43200 < th dose dependent sin 15 NA
297 443.96 humidity 60 43200 < th dose independent rect. 11 4
323 444.02 humidity 60 43200 < th dose independent rect. 12 19
413 444.30 humidity 60 43200 < th dose independent rect. 11 6
433 444.37 humidity 60 43200 < th dose independent rect. 20 21
437 444.38 wind 1 14400 > th dose dependent sin 17 NA
470 444.54 wind 9 14400 < th dose dependent sin 17 NA
489 444.67 humidity 60 43200 > th dose independent rect. 20 21
500 444.76 humidity 60 43200 > th dose independent rect. 11 22
507 444.83 humidity 60 43200 > th dose independent rect. 11 20
578 445.15 humidity 90 43200 < th dose dependent rect. 8 4
631 445.40 wind 1 43200 < th dose independent rect. 4 2
647 445.47 humidity 80 43200 < th dose dependent rect. 19 2
650 445.48 wind 1 14400 > th dose dependent rect. 11 14
686 445.65 wind 9 14400 < th dose dependent rect. 11 14
693 445.70 humidity 90 43200 < th dose dependent rect. 11 1
713 445.78 wind 3 14400 > th dose independent sin 16 NA
720 445.80 humidity 60 43200 < th dose independent sin 14 NA
774 445.96 wind 7 14400 < th dose dependent rect. 9 15
817 446.09 humidity 60 43200 > th dose independent rect. 11 6
829 446.12 humidity 60 43200 > th dose independent sin 14 NA
844 446.17 humidity 60 43200 < th dose independent rect. 8 9
849 446.20 wind 1 14400 > th dose dependent rect. 16 1
875 446.28 wind 3 14400 < th dose independent sin 17 NA
879 446.28 wind 9 14400 < th dose dependent rect. 16 1
917 446.39 humidity 80 43200 < th dose dependent rect. 18 4
943 446.48 humidity 60 43200 > th dose independent no NA NA
957 446.51 humidity 60 43200 > th dose independent rect. 16 23
960 446.52 humidity 60 43200 > th dose independent rect. 24 23
966 446.53 humidity 60 43200 > th dose independent rect. 6 23
995 446.61 humidity 60 43200 > th dose independent rect. 2 23