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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0220300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Phi-1 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.02 (0.0163) R2 : 0.000331
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0134 (0.0344) R2dN8 : 0.000428 R2N8 : 0.000331
σ : 0.307
deviance : 43.36
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
40.42 0.299 3.05 -0.136 0.0997 5.93 0.0199 -22.2 0.019 9.45 1.54 179 -- --
44.91 0.312 2.96 -0.0794 0.079 0.808 -0.973 -- 0.0304 5.58 1.005 197 -- --
40.42 0.296 3.05 -0.136 0.0999 5.94 -- -22.3 0.019 9.35 1.547 179 -- --
41.16 0.299 3.02 -0.00761 0.0979 0.844 -- -- 0.00967 8.8 1.722 199 -- --
41 0.298 3.05 -0.142 -- 6.14 -- -23.4 0.019 -- 1.561 184 -- --
42.92 0.307 3.01 0.0183 0.0854 -- 0.00712 -- 0.0153 9.97 -- -- -- --
42.92 0.307 3.01 0.0185 0.0855 -- -- -- 0.0153 9.91 -- -- -- --
41.69 0.301 3.01 -0.000319 -- 0.845 -- -- 0.0224 -- 1.5 240 -- --
41.05 0.298 3.01 -- 0.104 0.885 -- -- 0.0165 9.44 1.5 200 -- --
43.36 0.308 3.02 0.0175 -- -- -- -- 0.0153 -- -- -- -- --
42.93 0.306 3.01 -- 0.0854 -- -- -- 0.0132 9.89 -- -- -- --
41.69 0.301 3.01 -- -- 0.839 -- -- 0.0204 -- 1.5 239 -- --
43.36 0.307 3.02 -- -- -- -- -- 0.0134 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 38.92 temperature 30.0 90 > th dose dependent rect. 10 1
2 38.96 temperature 30.0 10 < th dose dependent rect. 20 1
3 39.10 wind 3.0 30 < th dose independent rect. 20 1
4 39.28 atmosphere 1010.0 30 < th dose dependent rect. 20 1
5 39.29 wind 5.0 10 < th dose dependent rect. 20 1
8 39.37 humidity 90.0 10 < th dose independent rect. 20 1
10 39.39 humidity 80.0 10 > th dose independent rect. 20 1
12 39.44 wind 9.0 10 < th dose independent rect. 21 23
13 39.44 humidity 60.0 10 > th dose dependent rect. 20 1
18 39.47 wind 1.0 10 > th dose independent rect. 20 1
20 39.47 temperature 10.0 10 > th dose independent rect. 20 1
22 39.47 temperature 30.0 10 < th dose independent rect. 20 1
23 39.47 humidity 50.0 10 > th dose independent rect. 20 1
26 39.47 atmosphere 995.0 10 > th dose independent rect. 20 1
28 39.47 atmosphere 1010.0 10 < th dose independent rect. 20 1
30 39.47 radiation 1.0 10 < th dose independent rect. 20 1
35 39.47 precipitation 0.1 10 < th dose independent rect. 20 1
36 39.47 temperature 10.0 10 > th dose independent rect. 21 23
37 39.47 radiation 1.0 10 < th dose dependent rect. 20 1
42 39.47 precipitation 0.1 10 < th dose dependent rect. 20 1
46 39.57 atmosphere 995.0 10 > th dose independent rect. 21 23
55 39.61 atmosphere 995.0 10 > th dose dependent rect. 20 1
86 39.63 temperature 10.0 10 > th dose dependent rect. 20 1
87 39.66 humidity 70.0 4320 > th dose independent rect. 21 1
93 39.70 wind 1.0 30 > th dose dependent rect. 20 1
95 39.70 humidity 90.0 30 < th dose dependent rect. 20 1
97 39.73 temperature 10.0 1440 > th dose independent rect. 21 1
100 39.73 temperature 30.0 1440 < th dose independent rect. 21 1
104 39.73 humidity 50.0 1440 > th dose independent rect. 21 1
110 39.73 atmosphere 995.0 1440 > th dose independent rect. 21 1
111 39.73 radiation 1.0 1440 < th dose independent rect. 21 1
131 39.73 temperature 10.0 1440 > th dose independent rect. 22 23
135 39.73 radiation 10.0 1440 < th dose dependent rect. 21 1
139 39.74 temperature 25.0 30 > th dose independent rect. 20 1
142 39.75 temperature 25.0 30 > th dose dependent rect. 20 1
175 39.96 precipitation 0.1 30 < th dose independent rect. 21 23
176 39.96 precipitation 0.1 30 < th dose dependent rect. 21 23
183 40.20 temperature 30.0 10 > th dose dependent rect. 12 1
192 40.36 temperature 30.0 90 > th dose independent rect. 10 1
193 40.36 atmosphere 1000.0 270 < th dose independent rect. 16 1
195 40.37 atmosphere 1000.0 270 < th dose dependent rect. 16 1
197 40.42 precipitation 0.1 270 > th dose independent rect. 16 1
200 40.42 precipitation 0.1 270 > th dose dependent rect. 16 1
202 40.43 precipitation 0.1 270 > th dose dependent rect. 16 3
227 40.50 precipitation 0.1 270 > th dose independent rect. 16 3
228 40.50 temperature 20.0 10 < th dose independent rect. 15 5
236 40.50 humidity 50.0 30 > th dose independent rect. 21 23
240 40.51 temperature 20.0 10 < th dose independent rect. 19 1
251 40.51 temperature 20.0 10 < th dose independent rect. 9 11
254 40.52 precipitation 0.1 270 > th dose independent rect. 18 1
262 40.53 wind 9.0 1440 < th dose independent rect. 21 1
271 40.56 temperature 30.0 10 < th dose independent rect. 21 23
274 40.57 temperature 30.0 10 > th dose dependent rect. 10 3
283 40.66 temperature 25.0 30 > th dose dependent rect. 20 4
350 40.85 humidity 90.0 90 > th dose independent rect. 8 2
372 40.89 wind 5.0 10 > th dose independent rect. 10 1
376 40.89 wind 5.0 10 > th dose dependent rect. 10 1
382 40.90 humidity 90.0 90 > th dose dependent rect. 8 1
387 40.91 radiation 40.0 10 < th dose dependent rect. 21 23
390 40.92 wind 7.0 90 > th dose dependent rect. 8 1
414 40.96 wind 7.0 90 > th dose independent rect. 8 1
473 41.02 precipitation 0.1 270 > th dose dependent rect. 5 13
479 41.04 radiation 40.0 90 < th dose dependent rect. 21 22
491 41.06 precipitation 0.1 270 > th dose dependent rect. 8 10
515 41.09 radiation 10.0 30 < th dose independent rect. 21 23
517 41.10 radiation 40.0 10 < th dose independent rect. 21 23
520 41.10 wind 9.0 90 < th dose dependent rect. 21 22
523 41.12 temperature 25.0 10 > th dose dependent rect. 20 9
594 41.16 temperature 30.0 10 > th dose dependent sin 7 NA
600 41.16 wind 9.0 90 > th dose dependent rect. 22 12
602 41.17 temperature 30.0 90 > th dose dependent sin 8 NA
616 41.19 atmosphere 1015.0 30 < th dose independent rect. 21 23
668 41.24 atmosphere 1005.0 10 < th dose independent rect. 18 3
798 41.39 temperature 20.0 10 > th dose independent rect. 13 7
802 41.39 wind 9.0 90 < th dose dependent rect. 21 14
804 41.40 precipitation 0.1 270 > th dose dependent sin 20 NA
828 41.43 radiation 40.0 90 < th dose dependent rect. 21 14
830 41.44 atmosphere 1000.0 720 > th dose independent rect. 13 2
840 41.45 radiation 20.0 270 < th dose independent rect. 21 12
848 41.46 atmosphere 995.0 90 > th dose dependent rect. 13 6
859 41.47 precipitation 0.1 270 > th dose dependent rect. 1 17
861 41.48 atmosphere 1000.0 720 > th dose independent rect. 12 5
867 41.48 radiation 40.0 90 < th dose dependent rect. 21 12
902 41.52 wind 1.0 720 > th dose independent rect. 9 4
904 41.52 temperature 30.0 720 < th dose independent rect. 17 4
967 41.55 humidity 60.0 720 > th dose independent rect. 17 4
973 41.55 precipitation 0.1 90 < th dose independent rect. 9 12
982 41.55 precipitation 0.1 90 < th dose dependent rect. 9 12
989 41.56 precipitation 0.1 270 > th dose dependent rect. 17 9
995 41.57 atmosphere 1000.0 720 > th dose independent rect. 8 1
1000 41.57 wind 1.0 90 > th dose independent rect. 9 12