Os06g0219400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF246, plant family protein.
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Os06g0219400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF246, plant family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 170.54 | 0.614 | 5.01 | 0.321 | 0.647 | -1.34 | -0.0791 | -1.14 | 0.188 | 10.5 | 19.8 | 4344 | -- | -- |
| 172.14 | 0.611 | 5.05 | 0.224 | 0.652 | -1.02 | -0.103 | -- | 0.168 | 10.4 | 20.1 | 4293 | -- | -- |
| 170.47 | 0.608 | 5 | 0.32 | 0.647 | -1.38 | -- | -1.22 | 0.19 | 10.5 | 19.68 | 4341 | -- | -- |
| 172.12 | 0.611 | 5.05 | 0.184 | 0.643 | -1.05 | -- | -- | 0.155 | 10.5 | 20.1 | 4291 | -- | -- |
| 194.87 | 0.65 | 5.01 | 0.29 | -- | -1.69 | -- | -1.78 | 0.191 | -- | 18.6 | 4422 | -- | -- |
| 192.1 | 0.65 | 4.99 | 0.838 | 0.643 | -- | -0.144 | -- | 0.438 | 10.3 | -- | -- | -- | -- |
| 192.18 | 0.649 | 4.99 | 0.832 | 0.643 | -- | -- | -- | 0.437 | 10.3 | -- | -- | -- | -- |
| 197.52 | 0.655 | 5.07 | 0.161 | -- | -1.09 | -- | -- | 0.15 | -- | 19.84 | 4376 | -- | -- |
| 172.54 | 0.612 | 5.06 | -- | 0.627 | -1.17 | -- | -- | 0.104 | 10.5 | 19.8 | 4314 | -- | -- |
| 217.38 | 0.689 | 5 | 0.822 | -- | -- | -- | -- | 0.436 | -- | -- | -- | -- | -- |
| 210.43 | 0.679 | 5.01 | -- | 0.639 | -- | -- | -- | 0.345 | 10.2 | -- | -- | -- | -- |
| 197.91 | 0.655 | 5.08 | -- | -- | -1.19 | -- | -- | 0.111 | -- | 19.83 | 4394 | -- | -- |
| 235.21 | 0.716 | 5.02 | -- | -- | -- | -- | -- | 0.344 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 158.32 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 15 |
| 3 | 162.23 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 18 |
| 4 | 162.47 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 5 | 163.31 | temperature | 30.0 | 270 | < th | dose independent | rect. | 9 | 19 |
| 22 | 165.50 | temperature | 30.0 | 270 | < th | dose independent | rect. | 9 | 8 |
| 71 | 169.01 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 5 |
| 72 | 169.01 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 7 |
| 81 | 169.23 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 11 | 17 |
| 90 | 169.54 | radiation | 20.0 | 10 | < th | dose dependent | sin | 9 | NA |
| 106 | 170.13 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 4 | 11 |
| 109 | 170.17 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 1 | 17 |
| 112 | 170.21 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 5 |
| 113 | 170.22 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 4 | 18 |
| 114 | 170.23 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 1 | 17 |
| 116 | 170.23 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 9 | 19 |
| 129 | 170.33 | temperature | 20.0 | 90 | > th | dose independent | rect. | 4 | 7 |
| 140 | 170.39 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 6 |
| 141 | 170.40 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 11 | 18 |
| 150 | 170.45 | wind | 1.0 | 90 | > th | dose independent | rect. | 24 | 5 |
| 158 | 170.48 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 13 |
| 191 | 170.60 | wind | 1.0 | 90 | > th | dose independent | rect. | 11 | 18 |
| 192 | 170.61 | temperature | 20.0 | 4320 | > th | dose independent | sin | 3 | NA |
| 193 | 170.61 | temperature | 20.0 | 4320 | < th | dose independent | sin | 3 | NA |
| 212 | 170.66 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 4 | 7 |
| 216 | 170.66 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 4 | 7 |
| 218 | 170.67 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 10 | 5 |
| 228 | 170.70 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 11 | 17 |
| 273 | 170.81 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 4 | 7 |
| 274 | 170.81 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 4 | 7 |
| 275 | 170.81 | wind | 1.0 | 270 | > th | dose independent | rect. | 14 | 9 |
| 277 | 170.81 | temperature | 10.0 | 90 | > th | dose independent | rect. | 11 | 17 |
| 285 | 170.82 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 9 | 23 |
| 306 | 170.86 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 5 | 3 |
| 310 | 170.87 | temperature | 20.0 | 4320 | < th | dose independent | no | NA | NA |
| 311 | 170.87 | wind | 9.0 | 90 | < th | dose independent | rect. | 4 | 7 |
| 316 | 170.88 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 340 | 170.91 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 370 | 170.96 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 4 | 8 |
| 378 | 170.97 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 9 | 23 |
| 391 | 170.98 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 7 | 23 |
| 406 | 171.00 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 16 | 20 |
| 417 | 171.02 | temperature | 20.0 | 4320 | > th | dose independent | no | NA | NA |
| 438 | 171.03 | temperature | 20.0 | 4320 | < th | dose dependent | no | NA | NA |
| 457 | 171.04 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 465 | 171.05 | humidity | 50.0 | 90 | > th | dose independent | rect. | 4 | 7 |
| 473 | 171.05 | temperature | 15.0 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 484 | 171.06 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 9 |
| 487 | 171.06 | temperature | 15.0 | 10 | > th | dose independent | rect. | 11 | 18 |
| 509 | 171.07 | temperature | 20.0 | 4320 | < th | dose dependent | sin | 1 | NA |
| 550 | 171.10 | temperature | 25.0 | 4320 | < th | dose dependent | sin | 3 | NA |
| 617 | 171.15 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 24 | 14 |
| 641 | 171.17 | temperature | 20.0 | 4320 | < th | dose dependent | sin | 15 | NA |
| 651 | 171.18 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 15 |
| 657 | 171.18 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 9 | 7 |
| 663 | 171.19 | radiation | 1.0 | 10 | < th | dose independent | rect. | 24 | 16 |
| 682 | 171.20 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 11 | 17 |
| 692 | 171.20 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 11 | 17 |
| 707 | 171.22 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 5 | 3 |
| 715 | 171.22 | radiation | 1.0 | 10 | < th | dose dependent | sin | 6 | NA |
| 752 | 171.26 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 11 | 18 |
| 771 | 171.29 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 829 | 171.34 | radiation | 1.0 | 10 | < th | dose independent | rect. | 24 | 14 |
| 856 | 171.36 | wind | 9.0 | 10 | < th | dose dependent | rect. | 5 | 6 |
| 967 | 171.49 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 19 |