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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0218800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.2 (0.0411) R2 : 0.0827
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.619 (0.0961) R2dE : 0.0829 R2E : 0.0827
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0104 (0.0865) R2dN8 : 3.63e-05 R2N8 : -0.000183
σ : 0.771
deviance : 274.22
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 9.97
memory length : 349
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
262.73 0.762 4.21 -0.0187 0.695 1.1 -1.76 -2.47 0.00514 13.5 9.49 275 -- --
267.94 0.762 4.21 -0.0541 0.556 1.11 0.389 -- 0.0535 14.4 9.96 341 -- --
265.44 0.759 4.22 -0.0953 0.705 1.14 -- -1.03 -0.011 13.7 9.46 304 -- --
268.43 0.763 4.2 -0.0139 0.605 1.1 -- -- 0.0541 14.3 9.69 349 -- --
271.32 0.767 4.19 0.168 -- 0.652 -- -0.852 0.0877 -- 11.78 337 -- --
286.6 0.794 4.22 0.0203 0.438 -- -0.666 -- -0.0302 3.14 -- -- -- --
288.03 0.795 4.21 0.0341 0.437 -- -- -- -0.0264 3.28 -- -- -- --
274.67 0.772 4.2 0.108 -- 0.596 -- -- -0.00599 -- 9.962 349 -- --
268.32 0.763 4.19 -- 0.645 1.15 -- -- 0.046 14.5 9.54 347 -- --
298.84 0.808 4.21 0.0527 -- -- -- -- -0.0149 -- -- -- -- --
288.06 0.794 4.21 -- 0.438 -- -- -- -0.0302 3.28 -- -- -- --
274.22 0.771 4.2 -- -- 0.619 -- -- 0.0104 -- 9.97 349 -- --
298.91 0.807 4.21 -- -- -- -- -- -0.0207 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 249.49 radiation 40.0 90 < th dose dependent rect. 5 7
2 249.51 radiation 10.0 90 < th dose independent rect. 5 7
3 249.86 radiation 20.0 30 < th dose independent rect. 5 21
4 250.31 wind 7.0 30 < th dose independent rect. 12 17
6 250.63 radiation 10.0 270 < th dose independent rect. 5 4
11 251.23 radiation 10.0 90 < th dose independent rect. 5 12
16 251.99 humidity 50.0 90 > th dose dependent rect. 5 7
24 252.57 humidity 70.0 90 > th dose independent rect. 5 7
27 252.88 radiation 40.0 30 < th dose dependent rect. 5 21
35 253.49 wind 1.0 90 > th dose dependent rect. 5 2
44 253.97 radiation 40.0 90 < th dose independent rect. 5 7
45 254.22 wind 7.0 90 < th dose independent rect. 9 20
49 254.55 wind 9.0 30 < th dose dependent rect. 12 17
57 254.82 radiation 40.0 90 < th dose dependent rect. 5 12
58 254.88 wind 7.0 90 < th dose independent rect. 7 22
66 255.13 radiation 10.0 10 < th dose independent rect. 5 13
71 255.25 wind 9.0 90 < th dose dependent rect. 18 11
97 256.02 humidity 70.0 10 > th dose independent rect. 5 21
103 256.22 radiation 40.0 90 < th dose independent rect. 5 18
109 256.38 radiation 20.0 10 > th dose independent rect. 12 23
112 256.43 temperature 20.0 270 > th dose dependent rect. 5 1
117 256.48 radiation 10.0 270 < th dose independent rect. 2 22
124 256.76 radiation 10.0 270 < th dose independent rect. 3 20
131 256.96 precipitation 0.1 30 < th dose independent rect. 12 17
132 256.96 precipitation 0.1 30 < th dose dependent rect. 12 17
133 257.00 wind 7.0 90 < th dose independent rect. 18 11
140 257.12 radiation 40.0 10 < th dose dependent rect. 5 23
144 257.25 humidity 50.0 30 > th dose independent rect. 5 7
155 257.52 temperature 10.0 30 > th dose independent rect. 5 7
157 257.52 atmosphere 995.0 30 > th dose independent rect. 5 7
158 257.52 atmosphere 1015.0 30 < th dose independent rect. 5 7
159 257.52 temperature 10.0 30 > th dose independent rect. 12 17
175 257.72 precipitation 0.1 30 < th dose independent rect. 5 7
176 257.72 precipitation 0.1 30 < th dose dependent rect. 5 7
181 257.80 radiation 20.0 270 < th dose dependent rect. 5 4
188 257.90 humidity 70.0 30 > th dose independent rect. 5 13
190 257.91 wind 9.0 720 < th dose independent rect. 7 22
201 258.15 radiation 10.0 1440 < th dose independent rect. 8 2
209 258.25 wind 7.0 270 < th dose independent rect. 23 14
213 258.30 wind 1.0 10 > th dose independent rect. 5 7
218 258.38 wind 9.0 30 < th dose independent rect. 5 7
240 258.62 radiation 1.0 90 < th dose dependent sin 9 NA
243 258.67 temperature 30.0 30 < th dose independent rect. 5 7
254 258.77 radiation 40.0 90 < th dose dependent rect. 5 18
264 258.96 radiation 10.0 1440 > th dose independent rect. 8 2
268 259.01 humidity 70.0 10 > th dose independent rect. 5 18
269 259.02 atmosphere 995.0 30 > th dose independent rect. 12 17
270 259.04 radiation 10.0 270 < th dose independent rect. 14 20
276 259.08 atmosphere 995.0 30 > th dose dependent rect. 5 7
295 259.30 temperature 20.0 270 > th dose independent rect. 5 1
296 259.31 radiation 20.0 1440 < th dose dependent rect. 8 1
298 259.34 precipitation 0.1 90 < th dose independent rect. 18 11
301 259.34 precipitation 0.1 90 < th dose dependent rect. 18 11
304 259.38 humidity 70.0 90 > th dose independent rect. 5 18
308 259.44 wind 9.0 90 < th dose dependent rect. 9 20
319 259.56 humidity 50.0 30 > th dose independent rect. 12 17
324 259.58 wind 9.0 90 < th dose dependent rect. 7 22
329 259.66 atmosphere 1015.0 30 < th dose independent rect. 12 17
340 259.77 radiation 10.0 270 < th dose dependent rect. 5 1
371 260.06 radiation 10.0 10 > th dose dependent rect. 12 23
374 260.13 atmosphere 995.0 30 > th dose dependent rect. 5 13
375 260.15 humidity 60.0 90 > th dose dependent rect. 5 12
393 260.32 radiation 1.0 90 > th dose independent sin 9 NA
395 260.32 atmosphere 995.0 90 > th dose independent rect. 5 13
398 260.34 wind 9.0 720 < th dose independent rect. 7 7
404 260.40 radiation 1.0 90 < th dose independent sin 9 NA
409 260.46 humidity 70.0 90 > th dose independent rect. 5 4
418 260.54 wind 5.0 90 < th dose independent rect. 23 6
425 260.59 humidity 90.0 90 < th dose independent rect. 6 1
427 260.62 radiation 10.0 90 < th dose independent rect. 18 11
433 260.66 temperature 10.0 90 > th dose independent rect. 18 11
434 260.66 humidity 50.0 90 > th dose independent rect. 18 11
439 260.66 temperature 10.0 90 > th dose independent rect. 5 13
440 260.66 atmosphere 1015.0 90 < th dose independent rect. 5 13
443 260.69 atmosphere 995.0 90 > th dose independent rect. 18 11
447 260.70 radiation 40.0 90 < th dose dependent rect. 18 11
465 260.83 precipitation 0.1 90 < th dose independent rect. 5 13
466 260.83 precipitation 0.1 90 < th dose dependent rect. 5 13
502 261.10 radiation 20.0 10 < th dose independent rect. 15 21
531 261.33 humidity 60.0 90 > th dose dependent rect. 5 18
539 261.39 temperature 30.0 10 < th dose independent rect. 5 13
540 261.39 temperature 15.0 90 > th dose dependent rect. 5 4
544 261.41 wind 1.0 90 > th dose independent rect. 5 2
556 261.50 humidity 70.0 90 > th dose independent rect. 5 2
576 261.62 radiation 10.0 270 < th dose independent sin 1 NA
603 261.74 radiation 20.0 270 < th dose dependent rect. 2 22
604 261.75 wind 9.0 90 < th dose dependent rect. 23 6
614 261.83 humidity 60.0 90 > th dose dependent rect. 23 6
615 261.84 temperature 10.0 1440 > th dose independent rect. 6 7
618 261.84 atmosphere 995.0 1440 > th dose independent rect. 6 7
619 261.84 temperature 10.0 1440 > th dose independent rect. 13 17
628 261.90 wind 1.0 30 < th dose independent rect. 6 1
634 261.95 wind 9.0 720 < th dose independent rect. 2 17
658 262.07 radiation 20.0 270 < th dose dependent rect. 3 20
670 262.12 precipitation 0.1 90 < th dose independent rect. 7 22
671 262.12 precipitation 0.1 90 < th dose dependent rect. 7 22
717 262.38 wind 7.0 720 < th dose independent rect. 17 2
740 262.54 atmosphere 1010.0 90 < th dose independent rect. 5 2
745 262.55 radiation 40.0 720 < th dose dependent rect. 5 2
761 262.61 humidity 50.0 90 > th dose dependent rect. 5 4
766 262.64 wind 1.0 90 > th dose independent rect. 5 4
784 262.75 atmosphere 1000.0 90 > th dose independent rect. 5 2
808 262.85 wind 7.0 90 < th dose independent rect. 5 2
810 262.85 temperature 10.0 90 > th dose independent rect. 5 2
812 262.85 temperature 30.0 90 < th dose independent rect. 5 2
813 262.85 humidity 50.0 90 > th dose independent rect. 5 2
818 262.85 radiation 1.0 90 > th dose independent rect. 15 21
819 262.85 temperature 10.0 90 > th dose independent rect. 7 22
845 262.97 precipitation 0.1 90 < th dose independent rect. 5 2
851 262.97 precipitation 0.1 90 < th dose dependent rect. 5 2
860 263.00 temperature 30.0 90 < th dose independent rect. 5 13
865 263.03 atmosphere 1015.0 90 < th dose independent rect. 23 6
881 263.13 precipitation 0.1 90 < th dose independent rect. 23 6
882 263.13 precipitation 0.1 90 < th dose dependent rect. 23 6
883 263.13 radiation 1.0 90 < th dose dependent rect. 23 15
884 263.14 radiation 1.0 90 < th dose dependent rect. 21 23
889 263.15 humidity 50.0 90 > th dose dependent rect. 5 2
907 263.20 humidity 70.0 720 > th dose independent rect. 5 2
908 263.20 radiation 10.0 270 < th dose independent rect. 19 23
912 263.21 radiation 10.0 1440 < th dose independent rect. 21 13
939 263.30 wind 1.0 10 > th dose independent rect. 5 13
941 263.31 humidity 90.0 30 < th dose dependent rect. 6 1
943 263.32 atmosphere 995.0 90 > th dose dependent rect. 5 2
947 263.35 precipitation 0.1 90 < th dose independent rect. 9 20
948 263.35 precipitation 0.1 90 < th dose dependent rect. 9 20
952 263.37 radiation 1.0 90 < th dose dependent rect. 23 6
959 263.41 radiation 10.0 270 < th dose independent no NA NA
965 263.44 radiation 1.0 90 < th dose independent rect. 23 6
982 263.48 temperature 10.0 90 > th dose independent rect. 23 6
983 263.48 temperature 30.0 90 < th dose independent rect. 23 6
984 263.48 humidity 50.0 90 > th dose independent rect. 23 6
987 263.48 atmosphere 995.0 90 > th dose independent rect. 23 6
991 263.48 temperature 10.0 90 > th dose independent rect. 5 18