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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0216400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.43 (0.0352) R2 : 0.778
β1 : 1.55 (0.129) R2dD : 0.0731 R2D : 0.059
β2 : 3.46 (0.0906) R2dC : 0.716 R2C : 0.702
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.325 (0.075) R2dN8 : 0.0123 R2N8 : -0.00799
σ : 0.66
deviance : 198.78
__
_____
C
peak time of C : 19.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
166.43 0.606 4.44 1.6 3.21 1.03 1.97 1.77 0.244 19.7 41.79 366 -- --
168.76 0.605 4.45 1.57 3.2 1.06 2.05 -- 0.232 19.7 41.14 398 -- --
176.23 0.618 4.44 1.58 3.18 1.03 -- 2.03 0.26 19.7 41.8 400 -- --
180.07 0.625 4.44 1.5 3.18 1.16 -- -- 0.241 19.7 41.8 400 -- --
393.55 0.924 4.4 0.616 -- 2.79 -- 3.29 -0.239 -- 10.03 826 -- --
185.47 0.638 4.43 1.59 3.46 -- 2.22 -- 0.32 19.3 -- -- -- --
198.78 0.66 4.43 1.55 3.46 -- -- -- 0.325 19.3 -- -- -- --
296.13 0.801 4.33 0.895 -- 3.34 -- -- 0.125 -- 0.9986 891 -- --
235.59 0.715 4.5 -- 3.05 1.41 -- -- 0.0515 19.9 40.06 424 -- --
835.34 1.35 4.35 1.49 -- -- -- -- 0.267 -- -- -- -- --
261.76 0.757 4.47 -- 3.45 -- -- -- 0.153 19.3 -- -- -- --
281.46 0.781 4.42 -- -- 4.76 -- -- -0.0382 -- 0.5434 902 -- --
893.56 1.4 4.39 -- -- -- -- -- 0.102 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 157.41 temperature 20.0 10 > th dose dependent rect. 13 7
3 158.04 precipitation 0.1 1440 < th dose independent rect. 9 4
4 158.04 precipitation 0.1 1440 < th dose dependent rect. 9 4
7 159.15 atmosphere 1010.0 270 < th dose independent rect. 16 9
8 159.42 temperature 25.0 10 > th dose independent rect. 13 7
14 159.78 temperature 15.0 90 > th dose independent rect. 20 17
33 160.63 temperature 10.0 10 > th dose dependent rect. 20 17
42 161.08 atmosphere 1015.0 270 < th dose dependent rect. 17 9
45 161.12 temperature 20.0 270 > th dose dependent rect. 11 5
60 161.71 temperature 15.0 270 > th dose independent rect. 17 19
69 161.98 temperature 30.0 270 < th dose independent rect. 6 14
73 162.04 radiation 30.0 270 < th dose independent rect. 7 15
89 162.31 temperature 15.0 270 > th dose independent rect. 14 23
115 162.71 temperature 25.0 270 > th dose dependent rect. 12 2
117 162.71 temperature 25.0 10 > th dose dependent rect. 13 17
147 163.11 radiation 40.0 270 < th dose dependent rect. 7 14
155 163.25 temperature 30.0 270 < th dose independent rect. 15 21
157 163.26 temperature 30.0 30 < th dose dependent rect. 8 15
189 163.63 temperature 15.0 1440 > th dose independent rect. 9 5
193 163.69 radiation 30.0 270 < th dose independent rect. 7 4
206 163.81 temperature 15.0 270 > th dose independent rect. 7 14
208 163.82 temperature 30.0 270 < th dose dependent rect. 7 13
231 164.08 temperature 25.0 270 > th dose independent rect. 12 3
234 164.12 atmosphere 1015.0 90 < th dose dependent rect. 12 7
239 164.16 temperature 10.0 270 > th dose dependent rect. 11 13
245 164.19 radiation 30.0 270 < th dose independent rect. 6 20
247 164.20 atmosphere 1015.0 10 < th dose dependent rect. 13 7
256 164.29 radiation 30.0 270 < th dose independent rect. 6 6
265 164.33 temperature 15.0 270 > th dose independent rect. 16 10
274 164.37 wind 9.0 90 < th dose dependent rect. 12 7
286 164.45 temperature 15.0 10 > th dose dependent rect. 20 6
290 164.47 atmosphere 1015.0 10 < th dose dependent rect. 20 6
300 164.56 temperature 25.0 270 > th dose independent rect. 13 1
307 164.59 atmosphere 1015.0 10 < th dose independent rect. 20 17
312 164.65 temperature 30.0 270 < th dose independent rect. 6 6
313 164.65 wind 7.0 10 < th dose independent rect. 13 7
336 164.78 radiation 1.0 270 > th dose dependent rect. 11 21
345 164.86 atmosphere 1015.0 90 < th dose independent rect. 19 17
373 165.04 atmosphere 1010.0 10 < th dose independent rect. 20 6
377 165.05 radiation 40.0 270 < th dose dependent rect. 6 20
380 165.08 temperature 30.0 270 < th dose independent rect. 7 4
444 165.36 radiation 1.0 270 > th dose dependent rect. 11 8
458 165.38 wind 7.0 10 < th dose independent rect. 13 19
460 165.39 radiation 30.0 720 < th dose independent rect. 24 10
485 165.56 temperature 10.0 10 > th dose dependent rect. 13 11
493 165.60 wind 7.0 270 < th dose independent rect. 10 21
502 165.66 wind 5.0 270 < th dose independent rect. 13 1
514 165.71 temperature 20.0 10 > th dose independent rect. 8 5
533 165.81 radiation 40.0 270 < th dose independent rect. 16 21
536 165.82 temperature 20.0 30 > th dose independent rect. 8 18
541 165.84 humidity 90.0 10 < th dose independent rect. 8 5
546 165.87 radiation 40.0 270 < th dose dependent rect. 7 4
565 165.98 atmosphere 1015.0 10 < th dose dependent rect. 20 17
573 166.02 humidity 90.0 10 < th dose dependent rect. 13 7
577 166.04 radiation 40.0 270 < th dose dependent rect. 6 6
607 166.19 radiation 30.0 270 < th dose independent sin 21 NA
623 166.29 atmosphere 995.0 10 > th dose dependent rect. 23 9
626 166.30 temperature 30.0 270 < th dose independent rect. 8 2
627 166.30 humidity 50.0 14400 > th dose independent rect. 24 9
629 166.31 radiation 40.0 270 < th dose dependent sin 21 NA
630 166.31 temperature 25.0 270 > th dose dependent rect. 2 14
640 166.36 temperature 30.0 90 < th dose dependent sin 20 NA
661 166.41 temperature 30.0 270 < th dose dependent sin 22 NA
673 166.44 temperature 30.0 720 < th dose independent rect. 24 11
700 166.47 wind 7.0 10 < th dose independent rect. 20 17
718 166.53 atmosphere 1015.0 270 < th dose independent rect. 17 18
728 166.57 wind 9.0 270 < th dose dependent rect. 11 20
739 166.61 atmosphere 1000.0 270 > th dose dependent rect. 22 8
740 166.62 temperature 30.0 270 < th dose independent sin 2 NA
741 166.62 temperature 10.0 43200 > th dose independent rect. 10 4
743 166.62 temperature 30.0 270 < th dose independent rect. 6 20
749 166.64 radiation 40.0 10 < th dose dependent sin 13 NA
763 166.69 atmosphere 995.0 30 > th dose dependent rect. 8 15
780 166.75 radiation 20.0 270 > th dose independent rect. 11 21
801 166.80 wind 1.0 10 > th dose independent rect. 8 5
827 166.89 wind 7.0 10 < th dose independent rect. 8 5
839 166.92 radiation 1.0 270 > th dose dependent sin 18 NA
849 166.96 humidity 60.0 90 > th dose independent rect. 8 15
851 166.96 atmosphere 1015.0 270 < th dose dependent rect. 13 1
867 166.99 radiation 40.0 270 < th dose dependent rect. 8 1
877 167.01 temperature 25.0 270 > th dose dependent sin 0 NA
909 167.08 temperature 10.0 43200 > th dose independent rect. 14 6
924 167.10 radiation 1.0 90 > th dose dependent rect. 13 18
933 167.12 atmosphere 1015.0 270 < th dose dependent rect. 12 3
937 167.13 radiation 1.0 10 > th dose dependent rect. 13 19
959 167.18 temperature 25.0 90 > th dose dependent sin 20 NA
970 167.21 radiation 1.0 270 > th dose independent rect. 8 1
983 167.23 atmosphere 1015.0 270 < th dose independent rect. 7 14