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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0212900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Heat shock protein Hsp70 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.94 (0.0584) R2 : 0.691
β1 : -5.16 (0.231) R2dD : 0.437 R2D : 0.161
β2 : 2.95 (0.148) R2dC : 0.274 R2C : 0.156
β3 : -2.38 (0.194) R2dE : 0.118 R2E : -0.0919
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 4.53 (0.794) R2dD*E : 0.0282 R2D*E : -0.127
γ1 : -2.19 (0.133) R2dN8 : 0.299 R2N8 : -0.0268
σ : 1.06
deviance : 519.62
__
_____
C
peak time of C : 6.93
E
wheather : radiation
threshold : 13.81
memory length : 1364
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
517.14 1.07 6.93 -5.17 2.89 -2.34 1.1 4.37 -2.19 6.86 13.38 1381 -- --
552.03 1.09 6.91 -4.65 2.86 -2.17 1.42 -- -2.03 6.89 14.37 1388 -- --
519.62 1.06 6.94 -5.16 2.95 -2.38 -- 4.53 -2.19 6.93 13.81 1364 -- --
556.59 1.1 6.89 -4.64 2.84 -2.13 -- -- -2.01 6.78 14.62 1399 -- --
935.73 1.42 7.01 -5.14 -- -2.16 -- 3.8 -2.18 -- 23.77 1435 -- --
695.71 1.24 6.77 -4.4 2.81 -- 1.22 -- -1.5 6.45 -- -- -- --
699.37 1.24 6.78 -4.39 2.82 -- -- -- -1.51 6.42 -- -- -- --
950.28 1.44 6.92 -4.3 -- -2.31 -- -- -1.84 -- 8.133 1452 -- --
1038.94 1.5 6.88 -- 2.77 -2.53 -- -- -1.75 6.44 9.995 7218 -- --
1112.54 1.56 6.83 -4.31 -- -- -- -- -1.45 -- -- -- -- --
1206.29 1.62 6.67 -- 2.76 -- -- -- -1.02 6.51 -- -- -- --
1418.96 1.75 6.9 -- -- -2.96 -- -- -1.78 -- 10 7231 -- --
1603.26 1.87 6.72 -- -- -- -- -- -0.97 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 509.25 radiation 10 1440 < th dose dependent rect. 9 22
3 510.21 radiation 10 1440 < th dose dependent sin 21 NA
8 511.45 radiation 10 1440 > th dose independent rect. 9 23
11 512.01 humidity 50 1440 > th dose dependent rect. 11 3
15 512.96 radiation 20 1440 < th dose dependent rect. 10 8
18 513.26 radiation 20 1440 < th dose dependent rect. 10 18
21 513.35 radiation 20 1440 < th dose dependent rect. 10 14
29 513.77 humidity 90 1440 < th dose dependent rect. 11 3
57 515.45 radiation 10 1440 > th dose independent sin 22 NA
68 515.84 radiation 10 1440 > th dose independent rect. 9 9
100 516.23 radiation 10 1440 > th dose independent rect. 15 23
201 518.38 radiation 10 1440 > th dose independent no NA NA
353 520.48 humidity 90 1440 < th dose dependent rect. 3 13
383 521.27 radiation 10 1440 > th dose independent rect. 13 23
397 521.82 radiation 1 1440 > th dose dependent rect. 10 8
451 522.69 humidity 90 1440 < th dose dependent sin 1 NA
462 522.87 radiation 1 1440 > th dose dependent rect. 10 21
469 523.14 humidity 50 1440 > th dose dependent rect. 4 12
583 525.00 humidity 50 1440 > th dose dependent sin 1 NA
647 525.78 radiation 1 1440 > th dose dependent sin 18 NA
728 527.22 radiation 20 1440 < th dose dependent rect. 2 17
744 527.26 radiation 20 1440 < th dose dependent rect. 21 22
752 527.30 radiation 20 1440 < th dose dependent rect. 2 21
778 527.36 radiation 20 1440 < th dose dependent no NA NA
873 528.24 radiation 20 1440 > th dose independent rect. 11 1
918 528.38 humidity 70 1440 > th dose independent rect. 10 18
921 528.39 humidity 70 1440 > th dose independent rect. 10 10
925 528.42 humidity 70 1440 > th dose independent rect. 10 15