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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0212600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Xyloglucan fucosyltransferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.12 (0.0444) R2 : 0.0878
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.796 (0.125) R2dE : 0.085 R2E : 0.0593
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.309 (0.0953) R2dN8 : 0.0285 R2N8 : 0.00281
σ : 0.83
deviance : 317.39
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 33.8
memory length : 1009
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
305.91 0.822 3.42 -2.69 0.0576 2.25 -1.14 -13.7 0.182 15.6 29.32 1232 -- --
313.21 0.824 3.12 -0.212 0.0907 0.767 -1.08 -- 0.283 16.1 33.4 1049 -- --
308.22 0.818 3.42 -2.73 0.159 2.26 -- -13.5 0.147 10.5 29.2 1245 -- --
315.15 0.827 3.11 -0.187 0.148 0.803 -- -- 0.294 11.2 33.13 1068 -- --
309.83 0.82 3.43 -2.75 -- 2.24 -- -13.5 0.144 -- 29.2 1261 -- --
341 0.866 3.15 -0.0231 0.0315 -- 1.24 -- 0.176 4.02 -- -- -- --
345.17 0.87 3.15 -0.0376 0.0729 -- -- -- 0.169 7.55 -- -- -- --
316.34 0.828 3.12 -0.203 -- 0.793 -- -- 0.297 -- 33.4 1049 -- --
316.12 0.828 3.12 -- 0.147 0.797 -- -- 0.318 11 33.37 1049 -- --
345.46 0.868 3.15 -0.0366 -- -- -- -- 0.17 -- -- -- -- --
345.21 0.869 3.15 -- 0.0726 -- -- -- 0.173 7.59 -- -- -- --
317.39 0.83 3.12 -- -- 0.796 -- -- 0.309 -- 33.8 1009 -- --
345.49 0.868 3.15 -- -- -- -- -- 0.174 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 297.87 humidity 70 720 > th dose independent rect. 18 9
2 298.18 wind 1 1440 < th dose independent rect. 4 2
3 299.21 radiation 10 14400 > th dose independent rect. 5 1
16 300.65 radiation 30 4320 < th dose independent rect. 19 13
19 300.82 radiation 30 4320 < th dose independent rect. 6 2
21 300.94 radiation 30 4320 < th dose independent rect. 2 6
25 301.12 radiation 30 14400 < th dose independent rect. 16 7
27 301.19 humidity 50 1440 > th dose independent rect. 16 1
28 301.20 radiation 30 14400 < th dose independent rect. 16 12
37 301.56 humidity 70 720 > th dose independent rect. 17 4
39 301.56 wind 9 43200 > th dose dependent rect. 10 9
42 301.67 radiation 1 1440 < th dose independent rect. 18 11
44 301.69 wind 1 1440 > th dose independent rect. 4 2
46 301.71 wind 9 43200 > th dose independent rect. 21 22
49 301.74 radiation 30 14400 < th dose independent rect. 16 1
53 301.88 wind 9 43200 > th dose independent rect. 1 18
66 301.99 radiation 1 1440 > th dose independent rect. 18 11
69 302.09 radiation 1 1440 > th dose dependent rect. 18 11
87 302.38 wind 9 43200 > th dose independent rect. 15 23
89 302.40 wind 9 43200 < th dose independent rect. 21 22
92 302.45 wind 9 43200 < th dose independent rect. 23 20
100 302.57 wind 9 43200 > th dose dependent rect. 12 20
101 302.59 radiation 1 1440 < th dose independent rect. 18 5
103 302.62 wind 9 43200 < th dose independent rect. 1 18
126 302.85 radiation 30 4320 > th dose independent rect. 16 16
132 302.93 humidity 60 1440 > th dose independent rect. 16 18
135 302.97 radiation 10 1440 < th dose dependent rect. 18 11
136 302.98 wind 9 43200 < th dose independent rect. 15 23
138 303.00 humidity 60 1440 < th dose independent rect. 16 18
143 303.08 wind 9 43200 > th dose independent rect. 12 22
144 303.10 wind 9 43200 > th dose independent sin 1 NA
148 303.11 radiation 1 1440 > th dose independent rect. 18 1
172 303.22 radiation 30 4320 > th dose dependent rect. 7 1
192 303.28 humidity 50 1440 < th dose independent rect. 16 1
193 303.28 humidity 70 720 < th dose independent rect. 18 13
198 303.34 radiation 30 4320 > th dose independent rect. 7 1
213 303.34 wind 9 43200 > th dose independent rect. 1 23
216 303.37 humidity 50 1440 < th dose dependent rect. 16 1
217 303.38 wind 9 43200 > th dose dependent rect. 10 12
222 303.41 humidity 70 720 < th dose independent rect. 18 2
234 303.43 wind 9 43200 > th dose independent no NA NA
236 303.44 wind 9 43200 > th dose independent rect. 6 23
239 303.45 humidity 60 1440 > th dose independent sin 11 NA
247 303.50 wind 9 43200 > th dose independent rect. 4 23
261 303.58 humidity 60 1440 < th dose independent sin 11 NA
273 303.61 radiation 1 1440 > th dose dependent rect. 18 1
304 303.69 wind 9 43200 > th dose dependent sin 18 NA
321 303.79 wind 9 43200 > th dose independent rect. 9 5
324 303.80 radiation 40 14400 > th dose dependent rect. 15 17
334 303.86 wind 9 43200 < th dose independent sin 1 NA
352 304.03 wind 9 43200 < th dose independent rect. 12 22
363 304.16 wind 9 43200 < th dose independent rect. 1 23
378 304.27 wind 9 43200 < th dose independent no NA NA
389 304.33 wind 9 43200 < th dose independent rect. 6 23
400 304.38 humidity 70 1440 < th dose dependent rect. 16 18
422 304.51 radiation 30 14400 > th dose dependent rect. 16 1
461 304.66 radiation 10 1440 < th dose dependent rect. 18 5
483 304.80 humidity 60 1440 < th dose dependent sin 11 NA
484 304.81 wind 9 43200 < th dose independent rect. 9 5
513 305.03 wind 7 43200 > th dose dependent rect. 21 21
533 305.19 wind 9 43200 > th dose dependent rect. 10 4
538 305.25 wind 1 1440 < th dose dependent rect. 4 2
563 305.52 wind 7 43200 > th dose dependent rect. 1 17
604 305.87 humidity 70 720 < th dose dependent rect. 18 13
612 305.91 humidity 70 720 < th dose dependent rect. 18 2
636 306.02 wind 7 43200 > th dose dependent rect. 6 12
648 306.09 wind 7 43200 > th dose dependent rect. 15 23
694 306.33 temperature 30 720 < th dose independent rect. 18 9
702 306.41 wind 7 43200 > th dose dependent sin 2 NA
776 306.82 wind 7 43200 > th dose dependent rect. 1 23
786 306.85 wind 7 43200 > th dose dependent rect. 6 23
798 306.94 wind 7 43200 > th dose dependent no NA NA
830 307.12 wind 7 43200 > th dose dependent rect. 6 18
844 307.16 wind 9 43200 > th dose independent rect. 15 17
846 307.19 radiation 30 14400 > th dose independent rect. 16 1
882 307.28 humidity 80 43200 > th dose independent rect. 22 1
897 307.33 radiation 10 43200 < th dose dependent rect. 9 1
933 307.38 temperature 30 720 > th dose dependent rect. 18 1
953 307.42 humidity 80 43200 < th dose dependent rect. 22 1
996 307.61 humidity 50 1440 > th dose independent rect. 19 22