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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0212500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Galactoside 2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan alpha-(1,2)-fucosyltransferase) (AtFUT1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0438) R2 : 0.115
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.3 (0.584) R2dE : 0.105 R2E : 0.106
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.169 (0.0924) R2dN8 : 0.00843 R2N8 : 0.00925
σ : 0.824
deviance : 312.69
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 2.8
memory length : 82
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16
open length of G : 0.817

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
306.14 0.822 3.03 0.2 0.0403 4.07 1.01 3.29 -0.149 10.5 2.755 83 16 0.833
307.17 0.816 3.04 0.201 0.0346 4.37 0.973 -- -0.148 10.9 2.785 83 16 0.833
309.48 0.819 3.05 0.21 0.0651 4.15 -- 5.18 -0.158 5.74 2.641 81 16 0.8
310.19 0.82 3.04 0.244 0.127 4.33 -- -- -0.152 5.59 2.8 82 16 0.82
309.67 0.82 3.04 0.247 -- 4.19 -- 5.48 -0.157 -- 2.491 84 16 0.801
343.75 0.869 3.05 0.251 0.0137 -- -0.956 -- -0.178 0.619 -- -- -- --
347.64 0.873 3.04 0.287 0.0206 -- -- -- -0.173 3.06 -- -- -- --
311.16 0.822 3.04 0.237 -- 4.27 -- -- -0.151 -- 2.795 82 16 0.817
311.63 0.822 3.04 -- 0.135 4.43 -- -- -0.167 5.59 2.8 82 16 0.833
347.66 0.871 3.04 0.288 -- -- -- -- -0.173 -- -- -- -- --
349.81 0.875 3.05 -- 0.0262 -- -- -- -0.205 3.1 -- -- -- --
312.69 0.824 3.04 -- -- 4.3 -- -- -0.169 -- 2.8 82 16 0.817
349.85 0.873 3.05 -- -- -- -- -- -0.205 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 314.70 wind 3 90 < th dose dependent rect. 16 1
2 318.11 wind 1 270 < th dose independent rect. 16 1
4 319.95 atmosphere 1000 10 < th dose independent rect. 3 1
11 319.95 atmosphere 1000 10 < th dose dependent rect. 3 1
32 320.83 humidity 70 270 < th dose independent rect. 17 2
33 320.88 humidity 70 270 < th dose dependent rect. 17 2
34 321.15 temperature 25 90 > th dose dependent rect. 2 2
35 321.19 wind 3 90 < th dose independent rect. 16 3
40 321.58 atmosphere 1000 90 < th dose independent rect. 2 12
52 322.14 atmosphere 1000 30 > th dose independent rect. 8 23
57 322.29 atmosphere 1000 90 < th dose dependent rect. 2 12
74 322.56 temperature 25 90 > th dose independent rect. 2 2
80 322.89 atmosphere 1000 10 < th dose dependent rect. 3 12
104 323.75 atmosphere 1000 720 < th dose independent rect. 3 1
109 323.87 radiation 10 90 < th dose independent rect. 7 1
122 324.65 atmosphere 1000 720 < th dose dependent rect. 3 1
124 324.67 atmosphere 1000 30 < th dose independent rect. 3 18
141 324.93 temperature 25 10 > th dose independent rect. 3 1
160 325.09 atmosphere 1000 30 > th dose independent rect. 11 20
170 325.27 atmosphere 1000 90 < th dose dependent rect. 18 20
177 325.41 wind 5 4320 > th dose independent rect. 21 2
182 325.66 humidity 90 90 > th dose dependent rect. 6 2
189 325.77 atmosphere 1000 10 < th dose dependent rect. 19 20
192 325.84 atmosphere 1000 90 < th dose independent rect. 18 20
197 325.88 atmosphere 1000 10 < th dose independent rect. 18 21
209 326.00 wind 5 4320 < th dose independent rect. 21 2
236 326.27 atmosphere 1000 90 > th dose independent rect. 3 12
241 326.29 humidity 90 90 > th dose independent rect. 7 1
244 326.32 atmosphere 1000 90 < th dose independent rect. 8 6
248 326.40 atmosphere 1000 10 < th dose independent rect. 9 6
278 326.75 humidity 80 10 > th dose independent rect. 8 1
290 326.91 atmosphere 1000 90 > th dose independent rect. 9 7
294 326.95 wind 5 1440 > th dose dependent rect. 21 2
295 326.95 radiation 20 90 < th dose dependent rect. 7 2
304 327.03 atmosphere 1000 10 < th dose dependent rect. 3 19
308 327.05 atmosphere 1005 10 > th dose dependent rect. 7 1
319 327.13 atmosphere 1000 270 > th dose independent rect. 1 12
328 327.21 wind 5 4320 > th dose independent rect. 18 6
347 327.33 atmosphere 1000 10 < th dose independent sin 4 NA
355 327.39 atmosphere 1000 30 > th dose independent sin 4 NA
365 327.42 radiation 10 90 < th dose independent rect. 6 5
367 327.43 wind 5 4320 < th dose independent rect. 18 6
368 327.44 atmosphere 1000 720 > th dose independent rect. 3 2
379 327.52 atmosphere 1000 30 < th dose independent rect. 9 20
388 327.58 atmosphere 1000 720 > th dose independent rect. 2 4
392 327.60 atmosphere 1000 10 > th dose independent rect. 18 23
416 327.73 atmosphere 1000 90 > th dose independent rect. 23 23
426 327.80 atmosphere 1000 90 > th dose independent rect. 19 21
437 327.87 radiation 10 90 < th dose independent rect. 6 22
475 328.08 humidity 80 1440 > th dose independent rect. 24 1
499 328.19 atmosphere 1000 90 > th dose independent rect. 21 19
500 328.19 wind 5 1440 > th dose dependent rect. 18 6
519 328.31 atmosphere 1000 10 < th dose independent rect. 12 2
522 328.32 atmosphere 1000 720 > th dose independent rect. 18 12
528 328.34 atmosphere 1000 90 < th dose independent rect. 12 1
532 328.35 atmosphere 1000 10 > th dose independent rect. 2 14
541 328.37 atmosphere 1000 90 < th dose independent rect. 2 9
551 328.43 radiation 20 14400 < th dose dependent rect. 23 1
553 328.45 humidity 80 1440 > th dose independent rect. 23 3
577 328.52 atmosphere 1000 10 < th dose dependent rect. 9 20
592 328.59 wind 1 10 < th dose independent rect. 13 1
594 328.59 wind 1 10 < th dose dependent rect. 13 1
599 328.60 atmosphere 1000 30 > th dose independent rect. 11 5
609 328.62 temperature 20 90 < th dose independent rect. 8 1
611 328.63 atmosphere 1000 10 > th dose independent rect. 20 20
613 328.64 atmosphere 1000 90 < th dose dependent rect. 12 1
652 328.74 atmosphere 1005 30 > th dose independent rect. 7 1
677 328.82 humidity 80 720 > th dose independent rect. 3 3
706 328.90 atmosphere 1000 720 < th dose independent rect. 23 5
707 328.90 atmosphere 1000 90 < th dose dependent rect. 8 6
724 328.95 humidity 90 90 > th dose dependent rect. 6 8
742 329.01 temperature 25 90 < th dose dependent rect. 7 3
750 329.06 humidity 80 720 > th dose independent rect. 1 5
776 329.13 humidity 90 270 > th dose independent rect. 13 1
778 329.13 humidity 90 270 > th dose dependent rect. 13 1
795 329.19 atmosphere 1000 10 < th dose independent rect. 9 13
820 329.24 atmosphere 1000 90 < th dose independent rect. 2 7
832 329.26 atmosphere 995 30 > th dose dependent rect. 11 20
836 329.27 atmosphere 1000 90 > th dose independent rect. 1 23
883 329.40 atmosphere 1000 10 < th dose independent rect. 13 23
889 329.41 atmosphere 995 30 > th dose dependent rect. 8 23
899 329.44 wind 5 30 < th dose independent rect. 7 13
913 329.48 humidity 80 720 > th dose independent rect. 4 1
917 329.49 atmosphere 1000 90 < th dose independent rect. 11 23
929 329.51 atmosphere 1000 10 < th dose independent rect. 3 7
957 329.58 atmosphere 1000 720 > th dose independent rect. 18 15
959 329.58 radiation 40 10 > th dose dependent rect. 14 1