Os06g0210300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.
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Os06g0210300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.51 | 0.368 | 3.59 | 1.22 | 0.0974 | 42.7 | -0.0087 | 89 | 0.0449 | 12.3 | 15 | 754 | -- | -- |
| 63.31 | 0.373 | 3.04 | 0.0129 | 0.0957 | 0.00208 | 0.00753 | -- | 0.0339 | 12.3 | 15 | 754 | -- | -- |
| 61.51 | 0.365 | 3.59 | 1.22 | 0.0974 | 42.7 | -- | 89 | 0.0448 | 12.3 | 15 | 754 | -- | -- |
| 62.81 | 0.369 | 3.03 | 0.0566 | 0.0778 | 0.245 | -- | -- | 0.0525 | 12.3 | 17.87 | 1069 | -- | -- |
| 62.11 | 0.367 | 3.59 | 1.22 | -- | 42.7 | -- | 89.1 | 0.0439 | -- | 14.99 | 754 | -- | -- |
| 63.31 | 0.373 | 3.04 | 0.0128 | 0.0957 | -- | 0.00777 | -- | 0.0339 | 12.3 | -- | -- | -- | -- |
| 63.31 | 0.373 | 3.04 | 0.0131 | 0.0956 | -- | -- | -- | 0.0339 | 12.3 | -- | -- | -- | -- |
| 63.17 | 0.37 | 3.03 | 0.0608 | -- | 0.282 | -- | -- | 0.0547 | -- | 17.9 | 1041 | -- | -- |
| 62.89 | 0.369 | 3.03 | -- | 0.0807 | 0.24 | -- | -- | 0.0515 | 12 | 17.8 | 1069 | -- | -- |
| 63.89 | 0.373 | 3.04 | 0.00999 | -- | -- | -- | -- | 0.0324 | -- | -- | -- | -- | -- |
| 63.32 | 0.372 | 3.04 | -- | 0.0955 | -- | -- | -- | 0.0324 | 12.3 | -- | -- | -- | -- |
| 63.26 | 0.37 | 3.04 | -- | -- | 0.253 | -- | -- | 0.0467 | -- | 17.9 | 1039 | -- | -- |
| 63.89 | 0.373 | 3.04 | -- | -- | -- | -- | -- | 0.0313 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.16 | temperature | 20.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 7 | 55.16 | humidity | 90.0 | 90 | > th | dose independent | rect. | 10 | 1 |
| 9 | 55.16 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 10 | 1 |
| 24 | 55.16 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 25 | 55.16 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 31 | 55.16 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 33 | 55.16 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 65 | 55.82 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 12 | 1 |
| 69 | 55.94 | radiation | 10.0 | 10 | < th | dose independent | rect. | 11 | 2 |
| 145 | 58.87 | wind | 9.0 | 10 | > th | dose independent | rect. | 15 | 1 |
| 154 | 58.87 | wind | 9.0 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 227 | 59.55 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 228 | 59.56 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 231 | 59.56 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 268 | 59.64 | atmosphere | 1010.0 | 720 | > th | dose dependent | rect. | 1 | 1 |
| 274 | 59.72 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 12 | 6 |
| 275 | 59.73 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 12 | 4 |
| 283 | 59.77 | wind | 9.0 | 30 | > th | dose dependent | rect. | 15 | 11 |
| 301 | 59.78 | temperature | 15.0 | 720 | < th | dose independent | rect. | 1 | 1 |
| 304 | 59.78 | temperature | 15.0 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 574 | 60.59 | wind | 9.0 | 30 | > th | dose dependent | sin | 14 | NA |
| 575 | 60.60 | radiation | 10.0 | 10 | < th | dose independent | rect. | 6 | 7 |
| 674 | 60.78 | wind | 1.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 675 | 60.78 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 679 | 60.78 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 682 | 60.78 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 684 | 60.78 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 687 | 60.78 | wind | 1.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 688 | 60.78 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 706 | 60.83 | wind | 9.0 | 30 | < th | dose independent | rect. | 11 | 23 |
| 719 | 60.86 | temperature | 15.0 | 720 | < th | dose independent | sin | 6 | NA |
| 720 | 60.86 | humidity | 70.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 723 | 60.87 | temperature | 15.0 | 720 | < th | dose dependent | sin | 4 | NA |
| 747 | 60.92 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 753 | 60.92 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 767 | 60.96 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 10 | 1 |
| 798 | 61.00 | humidity | 70.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 851 | 61.06 | atmosphere | 1010.0 | 720 | > th | dose independent | rect. | 1 | 1 |
| 862 | 61.07 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 878 | 61.10 | temperature | 25.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 884 | 61.11 | radiation | 20.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 900 | 61.13 | temperature | 15.0 | 720 | > th | dose independent | sin | 7 | NA |
| 902 | 61.13 | radiation | 40.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 920 | 61.17 | temperature | 30.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 924 | 61.18 | wind | 5.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 926 | 61.18 | humidity | 60.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 932 | 61.19 | temperature | 10.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 935 | 61.19 | humidity | 90.0 | 30 | < th | dose independent | rect. | 10 | 1 |
| 940 | 61.19 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 10 | 1 |
| 945 | 61.19 | temperature | 10.0 | 30 | > th | dose independent | rect. | 11 | 23 |
| 947 | 61.19 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 956 | 61.20 | wind | 7.0 | 30 | < th | dose dependent | rect. | 10 | 1 |
| 959 | 61.21 | wind | 1.0 | 30 | > th | dose independent | rect. | 10 | 1 |
| 994 | 61.25 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 10 | 1 |